Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_F22
(1132 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 262 4e-70
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 250 1e-66
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 107 1e-23
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 87 2e-17
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 54 1e-07
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 48 2e-05
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.053
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 262 bits (641), Expect = 4e-70
Identities = 120/230 (52%), Positives = 160/230 (69%)
Frame = +2
Query: 233 FEXXPKNFAIGQGIQPTRDLSRFVXWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTT 412
FE +NF IGQ IQP +D++RFV WPKYIR+QRQ A+LQ+RLKVPP INQF LD +
Sbjct: 33 FEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQS 92
Query: 413 AKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKK 592
A+ FK+L+KYRPE+ RPNT+R G NT+T+LVE ++
Sbjct: 93 ARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVETRR 152
Query: 593 AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGD 772
AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V D
Sbjct: 153 AQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPED 212
Query: 773 RASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSXARIXKLXKAKXRXL 922
+++ +K+VE + NF+ER+EE+RKHWGGGV+ KS A+ K+ +A+ R L
Sbjct: 213 KSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSDAKKLKIERARARDL 262
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 250 bits (612), Expect = 1e-66
Identities = 120/230 (52%), Positives = 160/230 (69%)
Frame = +2
Query: 233 FEXXPKNFAIGQGIQPTRDLSRFVXWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTT 412
FE +NF IGQ IQP +D++RFV WPKYIR+QRQ A+LQ+RLKVPP INQF LD +
Sbjct: 33 FEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQS 92
Query: 413 AKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKK 592
A+ FK+L+KYRPE+ RPNT+R G NT+T+LVE ++
Sbjct: 93 ARQAFKLLDKYRPESTEVTK--------------------RPNTVRHGVNTITRLVETRR 132
Query: 593 AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGD 772
AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V D
Sbjct: 133 AQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPED 192
Query: 773 RASFSKVVEAIKTNFNERYEELRKHWGGGVLGNKSXARIXKLXKAKXRXL 922
+++ +K+VE + NF+ER+EE+RKHWGGGV+ KS A+ K+ +A+ R L
Sbjct: 193 KSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSDAKKLKIERARARDL 242
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 107 bits (258), Expect = 1e-23
Identities = 47/75 (62%), Positives = 59/75 (78%)
Frame = +2
Query: 233 FEXXPKNFAIGQGIQPTRDLSRFVXWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTT 412
FE +NF IGQ IQP +D++RFV WPKYIR+QRQ A+LQ+RLKVPP INQF LD +
Sbjct: 136 FEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHS 195
Query: 413 AKGLFKILEKYRPET 457
A+ FK+L+KYRPE+
Sbjct: 196 ARQAFKLLDKYRPES 210
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 87.4 bits (207), Expect = 2e-17
Identities = 38/57 (66%), Positives = 45/57 (78%)
Frame = +2
Query: 233 FEXXPKNFAIGQGIQPTRDLSRFVXWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 403
FE +NF IGQ IQP +D++RFV WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 136 FEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 54.4 bits (125), Expect = 1e-07
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Frame = +2
Query: 545 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL-- 718
++ G N TK + + ++++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACG 94
Query: 719 VHRKTCTCLALTNVESGDRASFSKVVEAIK 808
V R N S ++ K+ E ++
Sbjct: 95 VTRPVIAASITQNEGSQLKSQIQKIKEDVE 124
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 47.6 bits (108), Expect = 2e-05
Identities = 20/89 (22%), Positives = 44/89 (49%)
Frame = +2
Query: 542 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALV 721
T+R G V K + + + + ++A +V PI++ +P +C + +PY + + +LG V
Sbjct: 68 TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127
Query: 722 HRKTCTCLALTNVESGDRASFSKVVEAIK 808
+ + L + + +V EA++
Sbjct: 128 GHRRPSILIFVKPSGDFKELYDEVAEALR 156
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.053
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -1
Query: 499 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 380
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,794,081
Number of Sequences: 27780
Number of extensions: 309714
Number of successful extensions: 860
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3057296194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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