Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_F21
         (1193 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    24   2.0  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    24   2.6  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    22   7.9  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   7.9  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   7.9  

>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 24.2 bits (50), Expect = 2.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 497 CYNCNNEVTASTAKKLHECIE 559
           C  CN +V A+  K LH  I+
Sbjct: 70  CAKCNEKVKANVRKVLHHLID 90


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 305 ECKKVAKTEVLDPDFEEDLSLWMCLRCGT 391
           E  KV +  +LD D+  +  +WM L C +
Sbjct: 389 EGMKVFEELLLDADWSVNAGMWMWLSCSS 417


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = +3

Query: 312 KKLQKLRYLIQILKKICPCGCVYVVARNSVAEHAINML 425
           KKL+++R + ++  ++   GC   +  + V +H I ++
Sbjct: 24  KKLEQMRQVHEVDNQLKQMGCDLDIPNSVVQKHLILLM 61


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 614 ELPFETKDFSIIETISKDPLSKGKDKAMVNLGRVRGLS 727
           ++ +  +   + E IS   LSK ++  +  LGR++G+S
Sbjct: 184 DISYSQRMARVEEVISDLALSKCQNTPIGILGRIKGIS 221


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +2

Query: 614 ELPFETKDFSIIETISKDPLSKGKDKAMVNLGRVRGLS 727
           ++ +  +   + E IS   LSK ++  +  LGR++G+S
Sbjct: 184 DISYSQRMARVEEVISDLALSKCQNTPIGILGRIKGIS 221


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,122
Number of Sequences: 336
Number of extensions: 3847
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 34733218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)