Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_F21
(1193 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 65 2e-11
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 55 2e-08
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 43 1e-04
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 40 0.001
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 38 0.004
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 36 0.008
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 36 0.011
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 35 0.026
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 34 0.034
SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase Ubp11|Schizo... 34 0.045
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 31 0.24
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 31 0.32
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 28 2.2
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha... 27 3.9
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 27 3.9
SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 27 6.8
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 27 6.8
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 26 9.0
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 65.3 bits (152), Expect = 2e-11
Identities = 51/183 (27%), Positives = 75/183 (40%)
Frame = +2
Query: 224 CPHVAKAVDLTRLKKAIKIGGFEKECSECKKVAKTEVLDPDFEEDLSLWMCLRCGTQLCG 403
C H+ K V L+ LK + + TE + ED L +C CG C
Sbjct: 56 CSHLKKGVKLSHLKGNAR--ALRDPSKHLCFICTTEKIK---REDYELTLCANCGYLFCC 110
Query: 404 RTRNKHALNHFNTPHSDCHGLAANSTTWEIYCYNCNNEVTASTAKKLHECIEYLKKQFLA 583
+ H+ HF C + N T + +CY+C+ ++ K L + +QF+
Sbjct: 111 NHESDHSRKHFEKNKKHC--VFVNIITLKCHCYSCDADIVIFDKKNL---VVRDVQQFIC 165
Query: 584 SSTVKSLPPIELPFETKDFSIIETISKDPLSKGKDKAMVNLGRVRGLSNLGNTCFFNSVM 763
S+ V SL ++ S + K S GK + GL NLG TCFFNS +
Sbjct: 166 SNLVSSLTKAPNVLKSNS-SHFKKEKKSKHSSGKSSKKYKVISP-GLKNLGATCFFNSTL 223
Query: 764 QCL 772
Q L
Sbjct: 224 QVL 226
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 55.2 bits (127), Expect = 2e-08
Identities = 52/149 (34%), Positives = 71/149 (47%), Gaps = 12/149 (8%)
Frame = +2
Query: 362 SLWMCLRCGTQLCGRTR------NKHALNHF-NTPHSDCHGLAANSTTW--EIYCYNCNN 514
+LWMCL CG CGR + N HAL+H+ +T H L + S +IYCY+C+
Sbjct: 182 NLWMCLTCGALSCGRKQYGGGGGNGHALSHYDDTGHPLAVKLKSISPDGQADIYCYSCDE 241
Query: 515 EVTASTAK--KLHECIEYLKKQFLASSTVKSLPPIELPFETK-DFSIIETISKDPLSKGK 685
E K L+ I+ K + T KSL ++L DF E +D S
Sbjct: 242 ERIDPNIKTHMLNFGIDIAK----LNKTEKSLAELQLEQNLNWDFGASE---EDDAS--- 291
Query: 686 DKAMVNLGRVRGLSNLGNTCFFNSVMQCL 772
K + G + GL NLGN+C+ S MQ L
Sbjct: 292 -KRLFGPG-LTGLKNLGNSCYLASTMQSL 318
Score = 29.1 bits (62), Expect = 1.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 350 EEDLSLWMCLRCGTQLCGRTRNKHALNHF 436
+E+ + +CL C CG T KH+L HF
Sbjct: 33 DEEGGIDLCLTCFQSGCGETGLKHSLVHF 61
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 42.7 bits (96), Expect = 1e-04
Identities = 23/47 (48%), Positives = 29/47 (61%)
Frame = +2
Query: 662 KDPLSKGKDKAMVNLGRVRGLSNLGNTCFFNSVMQCLVQTPYLLKVL 802
++ LS D M N GL NLGNTCF NSV+Q + QTP L++ L
Sbjct: 110 EEKLSMEWDNIMPN---APGLVNLGNTCFMNSVLQLMTQTPPLVQYL 153
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 39.5 bits (88), Expect = 0.001
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +2
Query: 719 GLSNLGNTCFFNSVMQCLVQT 781
GLSNLGNTC+ NS +QCL T
Sbjct: 312 GLSNLGNTCYMNSALQCLTHT 332
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 37.5 bits (83), Expect = 0.004
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +2
Query: 719 GLSNLGNTCFFNSVMQCLVQTPYLLK 796
GL NLGN+C+ NS +QC++ T L K
Sbjct: 280 GLYNLGNSCYMNSALQCMIHTHELTK 305
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 36.3 bits (80), Expect = 0.008
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 356 DLSLWMCLRCGTQLCGRTRNKHALNHF-NTPHSDCHGLAANSTTWEIYCYNCNNEV 520
D LW+CL CG CGR + HA H+ +T H C+ A T ++ Y +N V
Sbjct: 268 DKDLWICLICGNIGCGRYHDAHAKQHYVDTAH--CY--AMELETQRVWDYAGDNYV 319
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 35.9 bits (79), Expect = 0.011
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +2
Query: 719 GLSNLGNTCFFNSVMQCL 772
GL+NLGNTC+ N V+QCL
Sbjct: 73 GLTNLGNTCYMNCVLQCL 90
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 34.7 bits (76), Expect = 0.026
Identities = 38/166 (22%), Positives = 63/166 (37%), Gaps = 2/166 (1%)
Frame = +2
Query: 293 KECSECKKVAKTEVLDPDFEEDLSLWMCLRCGTQLC--GRTRNKHALNHFNTPHSDCHGL 466
+ CS CK++ K + CL C + C G +HA+ H H +
Sbjct: 36 RRCSTCKRINKRSI------------RCLSCHSVGCLWGHHGEEHAMEH-------THMI 76
Query: 467 AANSTTWEIYCYNCNNEVTASTAKKLHECIEYLKKQFLASSTVKSLPPIELPFETKDFSI 646
+ YC+ C + V + + L I+ +K S K LP +
Sbjct: 77 GVDVKNGHTYCFGCQDYVYQTELETLRFKIKNIKAW---QSDHKRLPE-----KYNQMVC 128
Query: 647 IETISKDPLSKGKDKAMVNLGRVRGLSNLGNTCFFNSVMQCLVQTP 784
+E K P + +RG+ NLG TCF + ++Q ++ P
Sbjct: 129 LEAYRKYP-------PVCATAGLRGIQNLGATCFMSVILQSILHNP 167
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 34.3 bits (75), Expect = 0.034
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 707 GRVRGLSNLGNTCFFNSVMQCLVQTPYLLKVLQEMSVPG 823
G GL NLGNTC+ NS +Q L P L + + + G
Sbjct: 97 GYPSGLINLGNTCYMNSTVQMLRAIPELSDAVSQFNSSG 135
>SPBC19C2.04c |ubp11||ubiquitin C-terminal hydrolase
Ubp11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 350
Score = 33.9 bits (74), Expect = 0.045
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 674 SKGKDKAMVNLGRVRGLSNL-GNTCFFNSVMQCLVQTPYLLKVLQ 805
S K +V ++GL N+ GN CF N V+Q L LL++L+
Sbjct: 35 SPSTGKRLVKNASIKGLYNVSGNDCFLNCVLQSLASQESLLEILK 79
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 31.5 bits (68), Expect = 0.24
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = +2
Query: 716 RGLSNLGNTCFFNSVMQCLVQ-TPY--LLKVLQEM 811
RG N GN CF NS++Q L+ P+ LLK + M
Sbjct: 133 RGFINTGNICFMNSILQALMYCVPFYNLLKQINRM 167
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 31.1 bits (67), Expect = 0.32
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Frame = +2
Query: 329 EVLDPDFEE-------DLSLWMCLRCGTQLCGRTRNKHALNHFNTPHSDCHGLAANSTTW 487
++LD DFE+ +LS++ CL CG GR + HA H T + H + N +T
Sbjct: 67 KLLDFDFEKVCSVSLTNLSVYACLVCGRYFQGRGPSSHAYFHALTEN---HHVFVNCSTL 123
Query: 488 EIYCYNCNNEVTASTAKKL 544
+ Y + +V +S + +
Sbjct: 124 KFYVLPESYQVESSALQDI 142
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 28.3 bits (60), Expect = 2.2
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +2
Query: 278 IGGFEKECSECKKVAKTEVLDPDFEEDLSLWM---CLRCGTQLCGRTRNKHALNHFNTPH 448
+GG EK+ E K+V + V P+ E L + L G G+T A+ H H
Sbjct: 147 VGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVAH----H 202
Query: 449 SDC 457
+DC
Sbjct: 203 TDC 205
>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 27.5 bits (58), Expect = 3.9
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Frame = +2
Query: 338 DPDFEEDLSLW---MCLRCGTQLCGRTRNKHALNHFNTPHSDCHGLAAN 475
DP +++ + ++ + G C + L HF +PH C G+ N
Sbjct: 86 DPSYKQQILIFTQPLIGNYGVPDCKKRDENGLLRHFESPHIQCAGVVVN 134
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 27.5 bits (58), Expect = 3.9
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Frame = +2
Query: 374 CLRCGTQ---LCGR-TRNKHALNHFNTPHSDCHGL 466
CL CGT LCG ++ HFN P S C+G+
Sbjct: 386 CL-CGTHFCFLCGAYLMEQNPYKHFNDPVSSCYGM 419
>SPBC24C6.03 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 425
Score = 26.6 bits (56), Expect = 6.8
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 464 LAANSTTWEIYCYNCNNEVTASTA 535
L + T+ +I C NCN+++T++TA
Sbjct: 241 LDLSKTSSDISCPNCNDQLTSTTA 264
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 26.6 bits (56), Expect = 6.8
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +2
Query: 473 NSTTWEIYCYNCNNEVTASTAKKLHECIEYLKK--QFLASSTVKSLPPIELPFETKDFSI 646
N+ T +I CY C E + + + H EY+ + Q++ + + + E D S
Sbjct: 528 NNQTKQIECYLCYTESSNVSNDEPHPSFEYVSRLSQYIYLLRIALVRLYTILMENNDSSQ 587
Query: 647 IETISKDP 670
+ +S DP
Sbjct: 588 RKPLSVDP 595
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 26.2 bits (55), Expect = 9.0
Identities = 9/38 (23%), Positives = 22/38 (57%)
Frame = +2
Query: 458 HGLAANSTTWEIYCYNCNNEVTASTAKKLHECIEYLKK 571
H ++N E+ +NC E++ S KK++ ++ +++
Sbjct: 79 HIKSSNEAKTELEIFNCYKEISISKEKKINSLLKLVRE 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,353,460
Number of Sequences: 5004
Number of extensions: 60410
Number of successful extensions: 187
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 643474786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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