Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_F20
         (1228 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0195 + 6578384-6578629,6578710-6579300,6586302-6587512,658...    30   3.2  
12_02_1174 - 26696869-26698191                                         30   4.3  
02_03_0142 - 15676923-15677159                                         30   4.3  

>10_02_0195 +
           6578384-6578629,6578710-6579300,6586302-6587512,
           6587593-6587844,6587932-6588042,6588133-6588214,
           6588299-6588382,6588464-6588658
          Length = 923

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = +1

Query: 541 TXVXPIGSAPLTIITKXDPQPXGGETRPTIKIPXVXPXXAPSEXPTRXXPDA-YRIPXRI 717
           T + P    P+T      P P    T P   +P + P   PS  P +  P++   +P + 
Sbjct: 442 TLMTPAPLVPITAAPPAPPSPPICTTPPGSPLPQISPVRGPSPPPQQVAPNSPTTLPRQP 501

Query: 718 SP 723
           SP
Sbjct: 502 SP 503


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 14/47 (29%), Positives = 16/47 (34%)
 Frame = +2

Query: 1040 PXPPPXXKXGXXPWXXPPKXTXXXXPXXPGXXXPPXXPPKKKXXXXK 1180
            P PPP  +    P   PP       P  P    PP  PP  +    K
Sbjct: 125  PPPPPRTRTRVEPPHRPPPVKPQPPPSLPPPPPPPPPPPPPRPPSVK 171


>02_03_0142 - 15676923-15677159
          Length = 78

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 748 MXXRXGSRREIFGXVSGKRQGXXGLGSPRELXGGXR 641
           M  R G+RR   G   GKR+G  G G+P     G R
Sbjct: 26  MGKRLGARRRAAGRRMGKRRGEEGTGTPGAGAAGRR 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,605,457
Number of Sequences: 37544
Number of extensions: 267003
Number of successful extensions: 593
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3771247248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)