Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_F19
         (1207 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   1.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   1.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   4.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   5.4  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 870 CRSISLITLXGYYGYIFFTTDSSICTNY 953
           C   S++ + GY  YI+FTT  +I   +
Sbjct: 535 CGLSSMLCIPGYMIYIWFTTSGTISEKF 562


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 870 CRSISLITLXGYYGYIFFTTDSSICTNY 953
           C   S++ + GY  YI+FTT  +I   +
Sbjct: 588 CGLSSMLCIPGYMIYIWFTTSGTISEKF 615


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 431 CNKIYL*IGLNITIQKTLVFY 369
           C++ YL I  NIT+++  +FY
Sbjct: 227 CDEPYLDITFNITMRRKTLFY 247


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 431 CNKIYL*IGLNITIQKTLVFY 369
           C++ YL I  NIT+++  +FY
Sbjct: 227 CDEPYLDITFNITMRRKTLFY 247


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 431 CNKIYL*IGLNITIQKTLVFY 369
           C++ YL I  NIT+++  +FY
Sbjct: 223 CDEPYLDITFNITMRRKTLFY 243


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
 Frame = +3

Query: 549 IVIFNQIYKEILLHLTILHRHPNGLPTLQ*RLTQPVLNCLFCCYRNTNL-FVGSH*FYSF 725
           +++F+    ++L  + I H       T +  L    +  L C    + L ++G +  ++ 
Sbjct: 152 LLVFDLNTSQLLKQVKIPHDIAVNTTTEKGALVTLSVQLLSCEVNGSTLVYIGDNEGFAL 211

Query: 726 MFYPCQESQDNTLSNNL*VMGPSSTYFLINGSN 824
           + Y   ++    L+++     P  T F ING +
Sbjct: 212 IIYNNSDNSFQRLTSSTFASDPRYTTFTINGES 244


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 301,792
Number of Sequences: 438
Number of extensions: 6554
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41211342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)