Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_F17
         (1271 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    33   0.57 
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    33   0.57 
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    33   0.57 
Z67990-1|CAA91932.1|  316|Caenorhabditis elegans Hypothetical pr...    29   5.3  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform b protein.
          Length = 518

 Score = 32.7 bits (71), Expect = 0.57
 Identities = 29/129 (22%), Positives = 38/129 (29%)
 Frame = +3

Query: 804  PPXXXXXFXXPQTGXHXXXXXXXNXXXXGVGXXAPXPXRXXXPXXKPQPXGXXPGXXPPX 983
            PP        P TG         +    G G   P P +      +  P G  P   PP 
Sbjct: 297  PPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPT 356

Query: 984  XQPGEXPXXNPXGXTXGXXGXXKXXXXGGPXXXPKXXGXRGXXXKKKKXXXXPXXXPKXX 1163
             +P   P   P G +       +    GGP   P     RG   K  +        P+  
Sbjct: 357  GRP---PRGGP-GKSSEESSESREGPRGGPRGGP-----RGGPRKSSEESSESREEPRGP 407

Query: 1164 XKXXXTGXP 1190
             +   TG P
Sbjct: 408  RRSPPTGSP 416


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform c protein.
          Length = 539

 Score = 32.7 bits (71), Expect = 0.57
 Identities = 29/129 (22%), Positives = 38/129 (29%)
 Frame = +3

Query: 804  PPXXXXXFXXPQTGXHXXXXXXXNXXXXGVGXXAPXPXRXXXPXXKPQPXGXXPGXXPPX 983
            PP        P TG         +    G G   P P +      +  P G  P   PP 
Sbjct: 318  PPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPT 377

Query: 984  XQPGEXPXXNPXGXTXGXXGXXKXXXXGGPXXXPKXXGXRGXXXKKKKXXXXPXXXPKXX 1163
             +P   P   P G +       +    GGP   P     RG   K  +        P+  
Sbjct: 378  GRP---PRGGP-GKSSEESSESREGPRGGPRGGP-----RGGPRKSSEESSESREEPRGP 428

Query: 1164 XKXXXTGXP 1190
             +   TG P
Sbjct: 429  RRSPPTGSP 437


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
            isoform a protein.
          Length = 524

 Score = 32.7 bits (71), Expect = 0.57
 Identities = 29/129 (22%), Positives = 38/129 (29%)
 Frame = +3

Query: 804  PPXXXXXFXXPQTGXHXXXXXXXNXXXXGVGXXAPXPXRXXXPXXKPQPXGXXPGXXPPX 983
            PP        P TG         +    G G   P P +      +  P G  P   PP 
Sbjct: 303  PPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPTGSPPTGSPPT 362

Query: 984  XQPGEXPXXNPXGXTXGXXGXXKXXXXGGPXXXPKXXGXRGXXXKKKKXXXXPXXXPKXX 1163
             +P   P   P G +       +    GGP   P     RG   K  +        P+  
Sbjct: 363  GRP---PRGGP-GKSSEESSESREGPRGGPRGGP-----RGGPRKSSEESSESREEPRGP 413

Query: 1164 XKXXXTGXP 1190
             +   TG P
Sbjct: 414  RRSPPTGSP 422


>Z67990-1|CAA91932.1|  316|Caenorhabditis elegans Hypothetical protein
            F02D10.1 protein.
          Length = 316

 Score = 29.5 bits (63), Expect = 5.3
 Identities = 24/78 (30%), Positives = 25/78 (32%)
 Frame = +3

Query: 873  NXXXXGVGXXAPXPXRXXXPXXKPQPXGXXPGXXPPXXQPGEXPXXNPXGXTXGXXGXXK 1052
            N    G G  AP       P  +P P G  PG   P   PGE     P G   G  G   
Sbjct: 142  NPGASGKGAAAPCEPSTPPPC-QPCPAGP-PGPPGPDGTPGEPGGPGPAGSPAGPSGPGP 199

Query: 1053 XXXXGGPXXXPKXXGXRG 1106
                 GP   P   G  G
Sbjct: 200  AGPP-GPAGPPGNDGQPG 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.139    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,765,527
Number of Sequences: 27780
Number of extensions: 117218
Number of successful extensions: 236
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3547715720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)