Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_F16
         (1273 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    24   2.1  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   4.9  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   8.5  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 875 PPPXXGXPPAGVXFXGPXLS 816
           P P  G PPAG+    P L+
Sbjct: 178 PYPNFGVPPAGIPLQNPGLN 197


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 394 PXPPPXPXPPPXPP 353
           P  PP P PP  PP
Sbjct: 178 PQVPPLPLPPIFPP 191


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 394 PXPPPXPXPPP 362
           P  PP P PPP
Sbjct: 95  PTTPPTPSPPP 105


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.310    0.144    0.484 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,019
Number of Sequences: 336
Number of extensions: 2147
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 37405004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)