Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_F16
         (1273 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.4  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    28   2.4  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   5.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   6.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   7.3  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 30/124 (24%), Positives = 37/124 (29%), Gaps = 2/124 (1%)
 Frame = +2

Query: 401 SXKXXXRXXXGXGXSXXG-PXPPPPPXXPXAPTXPXGXRG-SXXQXGXNXXPXKXGXXPK 574
           S +   +   G G S    P PPPPP    A + P   +G S             G  P 
Sbjct: 318 SRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPP 377

Query: 575 KNXXXKXPEXGPXPXKRXXXXXXPKXPPPXDNXXKTXPPXXGGKXPXGXXKSXXFPREPP 754
                +     P P         P  PP  +    + PP      P     S   P  PP
Sbjct: 378 PLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPV---PTPPSLPPSAP-PSLPP 433

Query: 755 RXPP 766
             PP
Sbjct: 434 SAPP 437



 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +2

Query: 842 PXPXGXPXXGGGEPPXTXXXXPXXPPVXPPTXP 940
           P P   P  G   PP +       PP  PP  P
Sbjct: 364 PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -1

Query: 388 PPPXPXPPPXPP 353
           PPP P PPP PP
Sbjct: 806 PPPAPLPPPAPP 817


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -2

Query: 783 GQGGXXGGXRGGSRG 739
           G+GG  GG RGG+RG
Sbjct: 31  GRGGARGGGRGGARG 45


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.0 bits (47), Expect(2) = 6.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 452 GPXPPPPP 475
           GP PPPPP
Sbjct: 760 GPPPPPPP 767



 Score = 21.8 bits (44), Expect(2) = 6.4
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 455 PXPPPPPXXPXAPTXP 502
           P PPPPP    A   P
Sbjct: 762 PPPPPPPGVAGAGPPP 777


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 388 PPPXPXPPPXPPXF 347
           PP  P PPP PP F
Sbjct: 5   PPGNPPPPPPPPGF 18


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.144    0.484 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,042,191
Number of Sequences: 5004
Number of extensions: 21897
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 691537944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)