Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_F14
         (1228 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    29   1.00 
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   5.3  
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    27   7.0  
SPAC631.01c |acp2||F-actin capping protein beta subunit |Schizos...    26   9.3  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 29.5 bits (63), Expect = 1.00
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -3

Query: 269 KLGHNRDYNIALGVYLQAYSLFNRYFTNVEKITPFANTQIRGNTLFIQYD 120
           KL +  +Y I+L +Y +A    N  +TN E +T       RGN+  I+YD
Sbjct: 653 KLANAINYLISLILYPKAR---NESWTNTESLTTGITVDERGNSKLIEYD 699


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
 Frame = -1

Query: 910 HVFWCLMPIPT-TLHCTSI*T--LFNPFMSSSSTAWLI*KGIEIC---GSFLAARPKF*- 752
           ++F  L+P+ + T  C SI    L N   +S S +      + IC    SF +A   F  
Sbjct: 231 YMFLELLPLQSITAACESILKDYLLNLVKTSESLSSQQMSCLRICCNSSSFWSAADSFKE 290

Query: 751 --TFMKNRAPRVICAQRLICLRTFKCCVTTTIFTTCSNSYISIFRDW 617
             +F+KN    V      +    +   +  + F TC N ++S+F +W
Sbjct: 291 VSSFLKNLLKNVTATPFEVSDMNW-AYIIASFFRTCLNDFVSVFPEW 336


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 336 ASWNTGCPGWWRHSS 292
           A+W  G PGW+ H++
Sbjct: 216 AAWEAGLPGWYSHNA 230


>SPAC631.01c |acp2||F-actin capping protein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 268

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -3

Query: 899 VSDANPNDTALYQHLNSL 846
           VSDA PND+AL   LN L
Sbjct: 249 VSDAQPNDSALRSVLNDL 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,432,009
Number of Sequences: 5004
Number of extensions: 97608
Number of successful extensions: 225
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 665388788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)