Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_F14
         (1228 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF192264-1|AAF18435.1|  321|Caenorhabditis elegans CHORD contain...   192   3e-49
AC006708-3|AAF60417.1|  321|Caenorhabditis elegans Chord protein...   192   3e-49
Z81592-1|CAB04725.1|  695|Caenorhabditis elegans Hypothetical pr...    32   0.72 
Z83127-3|CAB05629.2|  291|Caenorhabditis elegans Hypothetical pr...    29   5.1  
U40061-1|AAA81148.2|  573|Caenorhabditis elegans Hypothetical pr...    29   5.1  
AF047651-5|AAC02722.2|  702|Caenorhabditis elegans Germline-enha...    29   5.1  
Z73422-8|CAA97771.3|  240|Caenorhabditis elegans Hypothetical pr...    29   6.7  
AF492698-1|AAM49750.1|  647|Caenorhabditis elegans SPE-9 protein.      29   6.7  
Z92796-2|CAB07231.1|  347|Caenorhabditis elegans Hypothetical pr...    29   8.9  

>AF192264-1|AAF18435.1|  321|Caenorhabditis elegans CHORD containing
           protein protein.
          Length = 321

 Score =  192 bits (469), Expect = 3e-49
 Identities = 91/241 (37%), Positives = 137/241 (56%), Gaps = 5/241 (2%)
 Frame = +2

Query: 224 DKHLVQCYNRGCGQAFDPNDNEKDECRHHPGHPVFHDAYKGWSCCNKKSVDFTEFLNIKG 403
           D+  +QCY++GCG  FDP +N+ + C +HPG P FHDAYK W+CC+KKS DF  ++N KG
Sbjct: 3   DESKLQCYHKGCGLLFDPKENDNEACTYHPGGPYFHDAYKIWTCCDKKSTDFGTWMNYKG 62

Query: 404 CTLSKHSNVKPVEPVXXXXXXXXXXXXIIEVRAPVAGPQLQRPPFETPLVLLETHI-AES 580
           CT  KHSN KPV+ V              +V       +  +   +     +E ++  E 
Sbjct: 63  CTRGKHSNEKPVDIVKVAAVKEIRPEKEEDVIVWKGLNKSGKLDSKDATKRIEQNLNVEV 122

Query: 581 LKQSQPNTEQK----TPVSEDGNVAIGTSCKNGGCNTAFEGPQTNESLCTYHPGCPIFHE 748
              +    E+K    +  ++  ++ IG  C+N GC+T F+G +  E+ C +HPG  IFHE
Sbjct: 123 TPGATAAIEKKLKEISEAAQSADIQIGAPCRNNGCSTEFDGSKNKEN-CQHHPGAAIFHE 181

Query: 749 GLKFWSCCQKRTTDFNTFLNQPGCTTGAHKWVKESSNAGTVQCRWDWHQTPEHVIVSVYA 928
           G+K+WSCC K+T++F  FL Q GCT+G HK+    +N    + R DW  +   V ++VY 
Sbjct: 182 GMKYWSCCNKKTSNFGAFLEQVGCTSGEHKF---RNNEIVSKFREDWFSSNGFVTINVYC 238

Query: 929 K 931
           +
Sbjct: 239 R 239


>AC006708-3|AAF60417.1|  321|Caenorhabditis elegans Chord protein
           protein 1 protein.
          Length = 321

 Score =  192 bits (469), Expect = 3e-49
 Identities = 91/241 (37%), Positives = 137/241 (56%), Gaps = 5/241 (2%)
 Frame = +2

Query: 224 DKHLVQCYNRGCGQAFDPNDNEKDECRHHPGHPVFHDAYKGWSCCNKKSVDFTEFLNIKG 403
           D+  +QCY++GCG  FDP +N+ + C +HPG P FHDAYK W+CC+KKS DF  ++N KG
Sbjct: 3   DESKLQCYHKGCGLLFDPKENDNEACTYHPGGPYFHDAYKIWTCCDKKSTDFGTWMNYKG 62

Query: 404 CTLSKHSNVKPVEPVXXXXXXXXXXXXIIEVRAPVAGPQLQRPPFETPLVLLETHI-AES 580
           CT  KHSN KPV+ V              +V       +  +   +     +E ++  E 
Sbjct: 63  CTRGKHSNEKPVDIVKVAAVKEIRPEKEEDVIVWKGLNKSGKLDSKDATKRIEQNLNVEV 122

Query: 581 LKQSQPNTEQK----TPVSEDGNVAIGTSCKNGGCNTAFEGPQTNESLCTYHPGCPIFHE 748
              +    E+K    +  ++  ++ IG  C+N GC+T F+G +  E+ C +HPG  IFHE
Sbjct: 123 TPGATAAIEKKLKEISEAAQSADIQIGAPCRNNGCSTEFDGSKNKEN-CQHHPGAAIFHE 181

Query: 749 GLKFWSCCQKRTTDFNTFLNQPGCTTGAHKWVKESSNAGTVQCRWDWHQTPEHVIVSVYA 928
           G+K+WSCC K+T++F  FL Q GCT+G HK+    +N    + R DW  +   V ++VY 
Sbjct: 182 GMKYWSCCNKKTSNFGAFLEQVGCTSGEHKF---RNNEIVSKFREDWFSSNGFVTINVYC 238

Query: 929 K 931
           +
Sbjct: 239 R 239


>Z81592-1|CAB04725.1|  695|Caenorhabditis elegans Hypothetical
           protein T16G1.1 protein.
          Length = 695

 Score = 32.3 bits (70), Expect = 0.72
 Identities = 34/128 (26%), Positives = 47/128 (36%), Gaps = 7/128 (5%)
 Frame = +2

Query: 497 RAPVAGPQLQRPPFETPLVL--LETHIAESL-KQSQPNTEQKTPVSEDGNV--AIGTSCK 661
           R P+  P  Q  PF+ P+V   +E+ I  SL   S PN  +K+   ED +     G  C 
Sbjct: 299 RNPIV-PFNQAGPFQGPIVSPKVESMIENSLGSTSMPNPNRKSKYDEDDDYEDGDGNGCN 357

Query: 662 NGGCNTAFEGPQTNESLCTYHPGCPIFHEGLKFWSCCQKR--TTDFNTFLNQPGCTTGAH 835
             GC+    G     S       C     G      C +R    + N   N   C  G  
Sbjct: 358 GNGCSYGRRGGGNQNSGGGCEMNCRRNGGGNNDGCGCNRRGGNNNGNRGGNSQECGNGGC 417

Query: 836 KWVKESSN 859
            W   ++N
Sbjct: 418 PWNGNNNN 425


>Z83127-3|CAB05629.2|  291|Caenorhabditis elegans Hypothetical
           protein T23F6.3 protein.
          Length = 291

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 794 NTFLNQPGCTTGAHKWVKESSNAGTVQCRWDWHQTPE 904
           N  +N  GC T   +W + S+      CR  W  TP+
Sbjct: 224 NRCMNVIGCKTCVQRWHRSSTQPSCPLCRRRWIATPD 260


>U40061-1|AAA81148.2|  573|Caenorhabditis elegans Hypothetical
           protein ZK563.2 protein.
          Length = 573

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -1

Query: 706 LICLRTFKCCVTTTIFTTCSNSYISIFRDWSFLLCIWLRLFQ*FS-YVC 563
           +I +    CC    +  +C      I  +WSF L IW+R  Q +  ++C
Sbjct: 477 IILIIAITCCFICVLQNSCKEFLPKILHNWSF-LPIWMRSLQYYDPFMC 524


>AF047651-5|AAC02722.2|  702|Caenorhabditis elegans
           Germline-enhanced at-hook proteinprotein 1 protein.
          Length = 702

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 506 VAGPQLQRPP-FETPLVLLETHIAESLKQSQPNTEQKTP 619
           +  P++ RPP  +TP  L  T +   +K+ QP  EQ  P
Sbjct: 594 ITTPRILRPPTLKTPYSLPRTAVIPVMKKKQPEIEQVQP 632


>Z73422-8|CAA97771.3|  240|Caenorhabditis elegans Hypothetical
           protein B0564.1a protein.
          Length = 240

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -2

Query: 678 VLQPPFLQLVPIATFPSSETGVFCSVFG*DCFNDSAMCVSKSTRGVSKGGLCNCGPATGA 499
           +L+  F  ++    FP S+  +FC V   D  N  A CV+ ++  ++  G+   G A+ A
Sbjct: 97  LLEKAFESVILTEAFPRSQLDIFCEVIQGDGSN-LAACVNATSLALADAGIPMKGIASAA 155


>AF492698-1|AAM49750.1|  647|Caenorhabditis elegans SPE-9 protein.
          Length = 647

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
 Frame = +2

Query: 569 IAESLKQSQPNTEQKTPVSEDGNVAIGTSCKNGGCNTAFEGPQ--TNESLCTYHPG---- 730
           I + L++  PN  +KTP   + ++A+    +N   N   E P+  +N   C +  G    
Sbjct: 8   IIDFLEKDAPNDIEKTPNYNEXSLAVK---RNKNFNPCLENPKICSNRGKCLHENGNFYC 64

Query: 731 -CPIFHEG 751
            CP+ H G
Sbjct: 65  ICPVTHYG 72


>Z92796-2|CAB07231.1|  347|Caenorhabditis elegans Hypothetical
           protein H25K10.3 protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 8.9
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -1

Query: 703 ICLRTFKCCVTTTIFTTCS--NSYI-SIFRDWSFLLCIWLRL 587
           +C   FK CVTT I   C+  N+Y+ ++F  W +   I++ L
Sbjct: 60  LCTPFFKLCVTTAIIDICTLLNNYLGAMFPKWGWGTGIYIFL 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,566,175
Number of Sequences: 27780
Number of extensions: 559143
Number of successful extensions: 1373
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1369
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3391198850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)