Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_F14
         (1228 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             29   0.11 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    28   0.19 
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    24   2.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   3.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 28.7 bits (61), Expect = 0.11
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 503 PVAGPQLQRPPFETPLVLLETHIAESLKQSQP-NTEQKTPVSEDGNVAI 646
           P   PQ   PP E PLV ++ H   +    QP +   K   S+D N+++
Sbjct: 481 PTLLPQWCLPPREAPLVGVQPHQDSATPADQPLDLSAKPKNSQDNNISL 529


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 0.19
 Identities = 7/17 (41%), Positives = 15/17 (88%)
 Frame = -3

Query: 344 PCKHRGILDVLDGGDIH 294
           PC+HRG++ ++DG +++
Sbjct: 114 PCEHRGLVSIIDGWELN 130


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 243 HCTRCLSSGIFVIQ*IFYERRKNYPF 166
           HC RC S  I +   +    ++NYP+
Sbjct: 64  HCNRCTSRQIGIANTLIPFMQQNYPY 89


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 797  Y*NLWFFFGSKTKILDLHEK 738
            Y  +W FFG + + LDL+ +
Sbjct: 999  YGKVWLFFGCRQRNLDLYRQ 1018


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 300,915
Number of Sequences: 438
Number of extensions: 6989
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 41781924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)