Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_F09
         (1245 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.15 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 0.15
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 713 GXPPGXPPXAPPXPXPA 763
           G PPG PP APP   P+
Sbjct: 45  GPPPGGPPGAPPSQNPS 61



 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 710 PGXPPGXPPXAPP 748
           PG PPG PP   P
Sbjct: 48  PGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/28 (32%), Positives = 10/28 (35%)
 Frame = +2

Query: 710 PGXPPGXPPXAPPXPXPAVNGKXXRFXP 793
           P    G PP  PP   P+ N       P
Sbjct: 40  PNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = -3

Query: 871 PXFGRXTXPGXGNPPXGVXXSPP 803
           P  G    P  G PP G   +PP
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 407 VGXXFKPXKPXPPPPXP 357
           +G    P KP PPPP P
Sbjct: 332 LGDSDTPPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,529
Number of Sequences: 438
Number of extensions: 5062
Number of successful extensions: 23
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42502302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)