Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_F08
         (1177 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    29   1.7  
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       28   2.2  
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar...    28   2.9  
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual        28   2.9  
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        28   2.9  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    27   6.7  
SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10 |Sch...    27   6.7  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    27   6.7  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    26   8.8  

>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1050

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 107  PLRDPVAWRFGPHQHGAEAGQSSSTGRGDGSISAETSSN*CTRQRKTESS 256
            PL  P+++R GPH H  ++ ++ S+  G+ S+S +  +         ESS
Sbjct: 895  PLSVPLSFRLGPHMHSVKSFETESS-FGNRSLSPKQENRRTYSDSTIESS 943


>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 492 YCILKKKLLYFLICTYVY--IPKFNTRKR 572
           YC+  K L+Y L C Y+Y  +P  +++ R
Sbjct: 42  YCLAVKLLIYLLYCWYIYSEVPSVSSKFR 70


>SPAC977.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 492 YCILKKKLLYFLICTYVY--IPKFNTRKR 572
           YC+  K L+Y L C Y+Y  +P  +++ R
Sbjct: 42  YCLAVKLLIYLLYCWYIYSEVPSASSKFR 70


>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 492 YCILKKKLLYFLICTYVY--IPKFNTRKR 572
           YC+  K L+Y L C Y+Y  +P  +++ R
Sbjct: 42  YCLAVKLLIYLLYCWYIYSEVPSASSKFR 70


>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 492 YCILKKKLLYFLICTYVY--IPKFNTRKR 572
           YC+  K L+Y L C Y+Y  +P  +++ R
Sbjct: 42  YCLAVKLLIYLLYCWYIYSEVPSASSKFR 70


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 716 YFYLIPSIFIFIYLLNFLWTSTNNSRTKLAKSVQLF 823
           Y Y+IP++ + I  ++ +W +     T+L + VQLF
Sbjct: 4   YSYVIPAVILSIIAISGVWWNATLG-TRLDQKVQLF 38


>SPAC17H9.17c |mdm10||Mdm10/Mdm12/Mmm1 complex subunit Mdm10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 370

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 346 AGSSPGFRRQILSPHTYSPFLNICSIPP 263
           AG+S G R      H Y+PF+  C++ P
Sbjct: 233 AGASLGMRLHSGPSHPYAPFILTCTLNP 260


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -3

Query: 716 NNFVFPLMCPRRTDSFCLF*---VYFIQKFRSFIYRFRHYEVCW 594
           ++F+ PL+   R  SF L+    V F+   +   Y+F+  + CW
Sbjct: 139 DSFMLPLVLHHRFISFMLYIIGFVLFVASLKKGNYKFQFSQFCW 182


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 691 HIKGKTKLLFLFNSEHFHIYLPFKLSLDFHK*FKNKISQI 810
           ++KG  +  F    E++ IYL FKL  D+ +   N + QI
Sbjct: 539 YVKGDNRFCFKQLLEYYDIYLKFKLLADW-RLLTNPVLQI 577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,039,879
Number of Sequences: 5004
Number of extensions: 84582
Number of successful extensions: 190
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 631521694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)