Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_F08
         (1177 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0236 - 6131072-6131639,6132047-6132180                           30   4.1  
06_01_1201 + 10332105-10332168,10333054-10333571                       29   5.4  
05_01_0447 + 3554146-3554183,3554295-3554608,3555201-3555328,355...    29   7.1  
11_02_0048 - 7737479-7737973,7742487-7742745,7743037-7743095           29   9.4  

>09_02_0236 - 6131072-6131639,6132047-6132180
          Length = 233

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 21/54 (38%), Positives = 24/54 (44%)
 Frame = +2

Query: 251 SSQTRRYRTYVKERRICVRR*DLSSEAGGGARGLQRHLPVPHRPNALRRAATEA 412
           +   RR R +   RRI  RR       GGG+R     LP P  P A   AAT A
Sbjct: 148 AGSARRCRRHCHRRRIHRRR---KVRGGGGSRRRWTRLPPPDLPAAATDAATVA 198


>06_01_1201 + 10332105-10332168,10333054-10333571
          Length = 193

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +2

Query: 284 KERRICVRR*DLSSEA----GGGARGLQRHLPVPHRPNALRRAATEA 412
           + RR+  R  DL+ EA    GGGARG++R L    R +   +AA EA
Sbjct: 53  RRRRLSRRHADLTGEASGGSGGGARGIRRRL---RRQSRGEKAAVEA 96


>05_01_0447 +
           3554146-3554183,3554295-3554608,3555201-3555328,
           3555623-3555898,3556076-3556206,3556792-3556909,
           3556980-3557072,3557649-3557723,3557813-3557890,
           3558020-3558031
          Length = 420

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -1

Query: 178 GGRLTSLRSMLMGTESPS 125
           GGRLT LRS L+G E+P+
Sbjct: 33  GGRLTRLRSRLLGLETPA 50


>11_02_0048 - 7737479-7737973,7742487-7742745,7743037-7743095
          Length = 270

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +2

Query: 194 GSISAETSSN*CTRQRKTESSQTRRYRTYVKERRICVRR*DLSSEAGGGARG 349
           G  S  +S + C+R         +RY +Y  E   C++    +S++GGG  G
Sbjct: 5   GGSSPTSSPSVCSRSWSISEDSLKRYVSYASES--CIQELLAASDSGGGGGG 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,043,921
Number of Sequences: 37544
Number of extensions: 546628
Number of successful extensions: 1523
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1498
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3596576368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)