Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_F07
         (1229 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)       396   e-110
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)             36   0.087
SB_14482| Best HMM Match : Cornifin (HMM E-Value=3.7)                  30   3.3  
SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012)                 30   4.3  
SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7)                    29   7.6  
SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.6  
SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)                      29   7.6  
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   7.6  
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)       29   7.6  
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)           29   7.6  

>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
          Length = 240

 Score =  396 bits (976), Expect = e-110
 Identities = 190/221 (85%), Positives = 202/221 (91%)
 Frame = +3

Query: 81  ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 260
           ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTPIR+EIII+ATRTQ+VLGEKGR
Sbjct: 5   ISKKRKFVADGLFKAELNEFLTRELAEDGYSGVEVRVTPIRTEIIILATRTQNVLGEKGR 64

Query: 261 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 440
           RIRELTSVVQKRF  PE SVELYAEKVATRGLCAIAQ ESLRYKLIGGLAVRRACYGVLR
Sbjct: 65  RIRELTSVVQKRFGFPEGSVELYAEKVATRGLCAIAQCESLRYKLIGGLAVRRACYGVLR 124

Query: 441 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGI 620
           FIMESGA+GCEVVVSGKLRGQRAKSMKFVDGLM+H+G+P   YV+TA RHV LRQGVLGI
Sbjct: 125 FIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMVHAGEPTTHYVDTAVRHVYLRQGVLGI 184

Query: 621 KVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTSE 743
           KVKIMLPWD  GK GPKKP PD + + EPKDE VP +PTSE
Sbjct: 185 KVKIMLPWDPTGKTGPKKPLPDQVSIVEPKDEVVPAQPTSE 225


>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
          Length = 482

 Score = 35.5 bits (78), Expect = 0.087
 Identities = 17/30 (56%), Positives = 17/30 (56%)
 Frame = +2

Query: 635 VAVGPARQERPEEATTRPHPGDRAQGRARA 724
           VA GPAR   PE   TRPHPG    GR  A
Sbjct: 107 VAAGPARITSPEPPATRPHPGRVEAGRRLA 136


>SB_14482| Best HMM Match : Cornifin (HMM E-Value=3.7)
          Length = 301

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +2

Query: 647 PARQERPEEATTRPHPGDRAQGRARA 724
           PAR   PE   TRPHPG    GR  A
Sbjct: 42  PARVTSPEPPATRPHPGRVEAGRRLA 67


>SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012)
          Length = 1115

 Score = 29.9 bits (64), Expect = 4.3
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = +2

Query: 647 PARQERPEEATTRPHPGDRAQGRARA 724
           PAR   PE   TRPHPG    GR  A
Sbjct: 537 PARITSPEPPATRPHPGRVEAGRRLA 562


>SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +2

Query: 344 YSWSLRYRPGRISKIQAYRRSRCTSCLLWCSPFHHGIWCPW 466
           Y+W L + P  +  ++ Y R    +  L C+P  +  W  W
Sbjct: 4   YNWWLAWNPALLCLMRQYNRWLAWNPALLCNPRQYNRWLAW 44


>SB_57373| Best HMM Match : DUF292 (HMM E-Value=4.7)
          Length = 383

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
 Frame = +3

Query: 135 EFLTRELAEDGYSGVEVR--VTPIR----SEIIIMATRTQSVLGEKGRRIRELTSVVQKR 296
           E+L R++  D YS  E    +TP         +IMA R QSVL ++GR   +LT   Q+R
Sbjct: 175 EYLQRKI-NDAYSPEEAEKNITPYSLCSYENPMIMAFRLQSVLRKRGR--DDLT-WAQQR 230

Query: 297 FNIPEQSVELYA 332
           F+    SVE +A
Sbjct: 231 FDDLADSVEQFA 242


>SB_28852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3172

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 16/70 (22%), Positives = 34/70 (48%)
 Frame = +3

Query: 165  GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 344
            GY+  +     + S +++ A   +++  ++ + +RE    +QKRF   E+   +Y     
Sbjct: 1941 GYTARKEYSRCVTSIVLMQALVRRNLAVKRYQALREAAIGIQKRFRAKEEGKLVYLMFHI 2000

Query: 345  TRGLCAIAQA 374
             RG C + Q+
Sbjct: 2001 QRGACIVIQS 2010


>SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)
          Length = 401

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 485 WQAAWSTCQINEVCRWTHDPLW 550
           W+ AW+ C + E   +T++P W
Sbjct: 76  WKQAWTPCSLQETTIYTNNPPW 97


>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3889

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 800 ILSDSGDRLRQRRGREGAHFAGRLEGHGL 714
           +LS +GD +R   GRE  HF   +  HGL
Sbjct: 769 VLSSNGDFIRSFGGRESMHFRYCVYSHGL 797


>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
          Length = 976

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 479 CIWQAAWSTCQINEVCRWTHDPLWRP 556
           C W + W   +  E   WTH P  RP
Sbjct: 185 CRWLSQWKQSEEEESVLWTHSPARRP 210


>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
          Length = 426

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 608 STRNQGQNHVAVGPARQERPEEATTRP 688
           +++N  + H  + PA+QE+PE  + +P
Sbjct: 162 TSKNTSRTHKIIAPAKQEKPERYSRKP 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,583,440
Number of Sequences: 59808
Number of extensions: 550564
Number of successful extensions: 1772
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1765
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 3834215125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)