Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_F05
         (1232 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    29   0.071
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   4.7  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   4.7  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    23   6.2  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 29.1 bits (62), Expect = 0.071
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
 Frame = -2

Query: 340 CHYLLTSTFCIICPHSVELFCNVFTEKPISFIFXLPYSICK----RIHSFHKIINYPHTF 173
           C Y     F I   H + L C  +   P+ F+  + Y  C      +H    +  Y H F
Sbjct: 112 CVYYFYYAFIIFTVHLLFLLCIYYFVVPLFFLLCIYYFYCAFIIFTVHLLFLLCIY-HFF 170

Query: 172 TTMLIKSFHLL 140
              +I + HLL
Sbjct: 171 CAFIIFTMHLL 181


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -2

Query: 262  KPISFIFXLPYSICKRIHSFHKIINYPHTFTTMLIKS 152
            +PI F+F + +++   I  F  +I+   TF+ ++ K+
Sbjct: 1281 EPIGFVFLIFFALLMVIQFFAMMIHRFGTFSQIITKT 1317


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -2

Query: 262  KPISFIFXLPYSICKRIHSFHKIINYPHTFTTMLIKS 152
            +PI F+F + +++   I  F  +I+   TF+ ++ K+
Sbjct: 1281 EPIGFVFLIFFALLMVIQFFAMMIHRFGTFSQIITKT 1317


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 6.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 525 LHTLCHVKV*T*SEYFAKNFPLQQIISCF 439
           +HTL H  + T S +  KNF   +++  F
Sbjct: 1   MHTLQHFTIDTRSTHSMKNFKYLKVLVTF 29


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,744
Number of Sequences: 336
Number of extensions: 5078
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 36069111
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)