Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_F05
         (1232 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      30   0.76 
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc...    29   1.8  
SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog |Schizosacchar...    27   4.0  
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    27   7.1  
SPAC17C9.02c |lys7||alpha-aminoadipate reductase phosphopantethe...    27   7.1  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   9.3  

>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 29.9 bits (64), Expect = 0.76
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 523 THFMSCESIDLVRILCQKFSSPTNHF 446
           +HF SC S++ V ILC KF+     F
Sbjct: 73  SHFASCGSVNRVTILCDKFTGHPKGF 98


>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -1

Query: 434 LLVAWYARLKKMYVPMIDLFKDHHTMATRPIMSLSLDKHILHHLSS 297
           LL+ W   L+K Y+P+I   K  H ++   + + ++   ++  LSS
Sbjct: 223 LLIRW--SLQKGYIPIIKSTKKEHMLSDLDVFNFTIPDDVVQELSS 266


>SPCC11E10.09c ||SPCC188.01c|alpha-amylase homolog
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -2

Query: 262 KPISFIFXLPYSICKRIHSFHKIINY--PHTFTTMLIKSFHLLAPRXXT 122
           KP++F+   P++  K  H++  + NY  PH   T  +   H+  P   T
Sbjct: 140 KPVNFLLYQPFNSGKYYHNWQFVQNYDDPHETITGWLGDSHVNLPDIRT 188


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 787 FNVYSDILRLSVKAPSKSFQPLQRLAGTNRQTTNVILVYVP 909
           F     + +  +K PSK ++P + +   NRQ  N +L   P
Sbjct: 5   FEAAGRVAKGMLKDPSKKYKPFKGIQLPNRQWPNKVLTKAP 45


>SPAC17C9.02c |lys7||alpha-aminoadipate reductase
           phosphopantetheinyl transferase Lys7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 541 FTLGWITHFMSCESIDLVRILCQKFSSPTNHFLLWTC 431
           F   W+  FMS  +    +++    SS    FLLWTC
Sbjct: 135 FEASWMEDFMSVFTPCEWKLIKSSISSIDVFFLLWTC 171


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 10/44 (22%), Positives = 18/44 (40%)
 Frame = -3

Query: 741 ITLPQMSCSICSSNILPVCFFYIAKIFMEDSESKANAL*SICMC 610
           + L ++   IC     P    YI+  +  + + K  A   +C C
Sbjct: 135 LVLTRLLLGICEGGFFPCLSLYISMTYKREEQGKRLAYLYVCSC 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,044,404
Number of Sequences: 5004
Number of extensions: 84153
Number of successful extensions: 203
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 669373152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)