Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_F04
         (1262 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P08570 Cluster: 60S acidic ribosomal protein P1; n=15; ...    74   7e-12
UniRef50_Q16FG5 Cluster: Acidic ribosomal protein P1, putative; ...    54   1e-05
UniRef50_Q17FT7 Cluster: Acidic ribosomal protein P1, putative; ...    52   2e-05
UniRef50_P05386 Cluster: 60S acidic ribosomal protein P1; n=156;...    49   3e-04
UniRef50_Q16VR0 Cluster: Putative uncharacterized protein; n=1; ...    47   9e-04
UniRef50_P50344 Cluster: 60S acidic ribosomal protein P1; n=14; ...    45   0.004
UniRef50_Q9FLV1 Cluster: 60s acidic ribosomal protein P1; n=1; A...    36   2.9  

>UniRef50_P08570 Cluster: 60S acidic ribosomal protein P1; n=15;
           Eukaryota|Rep: 60S acidic ribosomal protein P1 -
           Drosophila melanogaster (Fruit fly)
          Length = 112

 Score = 74.1 bits (174), Expect = 7e-12
 Identities = 41/89 (46%), Positives = 44/89 (49%)
 Frame = +2

Query: 197 TGAQISTILXXXXXXXXPXWPGLFAKALEGINVRXLITNIGSGVXXXXXXXXXXXXXXXX 376
           TG +I+TIL        P WPGLFAKALEGINV+ LITNIGSGV                
Sbjct: 24  TGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITNIGSGVGAAPAGGAAPAAAAAA 83

Query: 377 XXXXXXXXXXXXXXXXXXSDDDMGFGLFD 463
                             SDDDMGFGLFD
Sbjct: 84  PAAESKKEEKKKEEESDQSDDDMGFGLFD 112


>UniRef50_Q16FG5 Cluster: Acidic ribosomal protein P1, putative;
           n=2; Aedes aegypti|Rep: Acidic ribosomal protein P1,
           putative - Aedes aegypti (Yellowfever mosquito)
          Length = 106

 Score = 53.6 bits (123), Expect = 1e-05
 Identities = 28/44 (63%), Positives = 30/44 (68%)
 Frame = +2

Query: 197 TGAQISTILXXXXXXXXPXWPGLFAKALEGINVRXLITNIGSGV 328
           T  +ISTI         P WPGLF KALEGINV+ LITNIGSGV
Sbjct: 34  TDEKISTI--QANVDIEPYWPGLFTKALEGINVKDLITNIGSGV 75


>UniRef50_Q17FT7 Cluster: Acidic ribosomal protein P1, putative;
           n=1; Aedes aegypti|Rep: Acidic ribosomal protein P1,
           putative - Aedes aegypti (Yellowfever mosquito)
          Length = 88

 Score = 52.4 bits (120), Expect = 2e-05
 Identities = 23/27 (85%), Positives = 24/27 (88%)
 Frame = +2

Query: 248 PXWPGLFAKALEGINVRXLITNIGSGV 328
           P WP LFAKALEGINV+ LITNIGSGV
Sbjct: 12  PYWPALFAKALEGINVKDLITNIGSGV 38


>UniRef50_P05386 Cluster: 60S acidic ribosomal protein P1; n=156;
           Eukaryota|Rep: 60S acidic ribosomal protein P1 - Homo
           sapiens (Human)
          Length = 114

 Score = 48.8 bits (111), Expect = 3e-04
 Identities = 29/91 (31%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
 Frame = +2

Query: 197 TGAQISTILXXXXXXXXPXWPGLFAKALEGINVRXLITNIGSG--VXXXXXXXXXXXXXX 370
           T  +I+ ++        P WPGLFAKAL  +N+  LI N+G+G                 
Sbjct: 24  TEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPS 83

Query: 371 XXXXXXXXXXXXXXXXXXXXSDDDMGFGLFD 463
                               SDDDMGFGLFD
Sbjct: 84  TAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114


>UniRef50_Q16VR0 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 88

 Score = 47.2 bits (107), Expect = 9e-04
 Identities = 26/42 (61%), Positives = 28/42 (66%)
 Frame = +2

Query: 197 TGAQISTILXXXXXXXXPXWPGLFAKALEGINVRXLITNIGS 322
           T  +ISTIL        P W  LFAKALEGINV+ LITNIGS
Sbjct: 49  TDEKISTILKAANVE--PYWRALFAKALEGINVKDLITNIGS 88


>UniRef50_P50344 Cluster: 60S acidic ribosomal protein P1; n=14;
           Dikarya|Rep: 60S acidic ribosomal protein P1 -
           Cladosporium herbarum (Davidiella tassiana)
          Length = 110

 Score = 45.2 bits (102), Expect = 0.004
 Identities = 27/72 (37%), Positives = 31/72 (43%)
 Frame = +2

Query: 248 PXWPGLFAKALEGINVRXLITNIGSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 427
           P W  LFAKALEG +V+ L+ N+GSG                                  
Sbjct: 41  PIWTSLFAKALEGKDVKDLLLNVGSG--GGAAPAAGGAAAGGAAAVLDAPAEEKAEEEKE 98

Query: 428 XSDDDMGFGLFD 463
            SDDDMGFGLFD
Sbjct: 99  ESDDDMGFGLFD 110


>UniRef50_Q9FLV1 Cluster: 60s acidic ribosomal protein P1; n=1;
           Arabidopsis thaliana|Rep: 60s acidic ribosomal protein
           P1 - Arabidopsis thaliana (Mouse-ear cress)
          Length = 111

 Score = 35.5 bits (78), Expect = 2.9
 Identities = 24/89 (26%), Positives = 30/89 (33%)
 Frame = +2

Query: 197 TGAQISTILXXXXXXXXPXWPGLFAKALEGINVRXLITNIGSGVXXXXXXXXXXXXXXXX 376
           T   IS ++          WP LFAK  E  N+  LI N+G+G                 
Sbjct: 23  TAENISKLVKTANVNVESYWPSLFAKLCEKKNIDDLIMNVGAGGCGVARPVTTAAPTASQ 82

Query: 377 XXXXXXXXXXXXXXXXXXSDDDMGFGLFD 463
                             S+DDM  GLFD
Sbjct: 83  SVSIPEEKKNEMEVIKEESEDDMIIGLFD 111


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 337,655,764
Number of Sequences: 1657284
Number of extensions: 3865305
Number of successful extensions: 6056
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6052
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 128364952603
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)