Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_F04
         (1262 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   2e-05
SB_43135| Best HMM Match : CMAS (HMM E-Value=0)                        31   1.9  

>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 47.6 bits (108), Expect = 2e-05
 Identities = 29/89 (32%), Positives = 36/89 (40%)
 Frame = +2

Query: 197 TGAQISTILXXXXXXXXPXWPGLFAKALEGINVRXLITNIGSGVXXXXXXXXXXXXXXXX 376
           T  +I T++        P WPGLFAKAL+G N+  LI  + +G                 
Sbjct: 24  TADKIETLVKAAKINVEPFWPGLFAKALQGHNIADLI--LSAGAPGAGGAVAAAPAAGGE 81

Query: 377 XXXXXXXXXXXXXXXXXXSDDDMGFGLFD 463
                             SDDDMGFGLFD
Sbjct: 82  AKAEEKKEEAKKEESEEESDDDMGFGLFD 110


>SB_43135| Best HMM Match : CMAS (HMM E-Value=0)
          Length = 254

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 307 DQXTDIDAFQGFGEQTWPXWRXSYSRRXQDGGN 209
           DQ   I+ F+  G++ WP +    S R + GG+
Sbjct: 102 DQIVSIEMFEAVGQENWPTYFQMLSERLKQGGS 134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,627,704
Number of Sequences: 59808
Number of extensions: 121768
Number of successful extensions: 215
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 3963988560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)