Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_F03
         (1253 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42831-1|AAA83513.2|  614|Caenorhabditis elegans Hypothetical pr...    29   9.1  
AF000299-1|AAC47980.1|  210|Caenorhabditis elegans Hypothetical ...    29   9.1  
AC024824-2|AAK85502.1|  740|Caenorhabditis elegans Hypothetical ...    29   9.1  
L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family ...    25   9.7  

>U42831-1|AAA83513.2|  614|Caenorhabditis elegans Hypothetical
           protein R11B5.1 protein.
          Length = 614

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 203 MKQTRKKEQQTXANRMMANDXHXRLEDQXXTEARL 99
           ++Q +KKEQ+    R+ A     RLE+Q     R+
Sbjct: 239 LEQAKKKEQRAEKERLQAKAEQKRLEEQTAAHCRV 273


>AF000299-1|AAC47980.1|  210|Caenorhabditis elegans Hypothetical
           protein E03H12.5 protein.
          Length = 210

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 17/75 (22%), Positives = 31/75 (41%)
 Frame = -3

Query: 288 TKAXPSKLGAFATTSNDEKKNXNETCDTHETDKKKGTADPXXQNDGERXAXXXXXXXXXX 109
           T A P+   A A  +  EKK+ ++  +  + DKK+       + DG++            
Sbjct: 54  TPAAPAPDAAAAAPAEGEKKDGDKKSEKKDGDKKEEEKKDEEKKDGDKKEDDKKDEKKDE 113

Query: 108 XXTAXREDXXRKKNE 64
                ++D   KK+E
Sbjct: 114 DKKDEKKDADEKKDE 128


>AC024824-2|AAK85502.1|  740|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.2 protein.
          Length = 740

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -3

Query: 321 IHXITNYQTADTKAXPSKLGAFATTSNDEKKNXNETCDTHETDKKK 184
           I  IT+++ AD K   + + + AT+S D+K+   E  D+    K+K
Sbjct: 86  ITEITHHEFADLKKGMNNVKSSATSSTDKKRKIGEDEDSQIEVKRK 131


>L25598-3|AAM15551.1|  759|Caenorhabditis elegans Calpain family
            protein 1, isoform d protein.
          Length = 759

 Score = 25.0 bits (52), Expect(2) = 9.7
 Identities = 16/59 (27%), Positives = 16/59 (27%)
 Frame = +2

Query: 983  GXGGGGGGFXXXKKXXXXGKXGXXXGPXXXXXXKXXXXXXXXGXGXXXXXGXXGXXXXG 1159
            G GGGGGGF         G  G   G                G G     G  G    G
Sbjct: 58   GGGGGGGGFGGGNGGFGGGGGGSGGGGGGNNIGSLVGSLIGGGGGGGNYGGGGGNQGGG 116



 Score = 21.8 bits (44), Expect(2) = 9.7
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 971  FXXXGXGGGGGG 1006
            F   G GGGGGG
Sbjct: 51   FGGGGGGGGGGG 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,166,651
Number of Sequences: 27780
Number of extensions: 252531
Number of successful extensions: 1747
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1431
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3485108972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)