Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_F02
         (1199 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   5.2  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    27   5.2  

>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 15/66 (22%), Positives = 25/66 (37%)
 Frame = +2

Query: 371  YYFFSCEQNRAXLLSCDIGLAFDPTTGRCVDADRVQCNATQNTNDKNHI*TNLNLYVVFS 550
            YY   C      +L+C + +           AD+V  N  +   +K  +  NL    +  
Sbjct: 1071 YYASQCNTQMLAMLACVLDIPNPKKQSGNTSADQVLFNQPKQVTEKLGVQLNLPKTKILE 1130

Query: 551  KIKLHS 568
            K+  HS
Sbjct: 1131 KVSSHS 1136


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 287 GFTCPPAPLDAIGNPLNNVINYKYXGNCYYFFS 385
           G T PP P +++ N +N     +     Y++ S
Sbjct: 340 GLTLPPVPTESVPNDINIYFGTRLPNEIYFYIS 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,963,408
Number of Sequences: 5004
Number of extensions: 35662
Number of successful extensions: 75
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 647459150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)