Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_F02
         (1199 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784     31   1.8  
04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834     30   3.1  
09_04_0563 + 18546967-18547407,18547503-18548007,18548271-185483...    29   5.5  
07_01_0689 - 5218920-5220107                                           29   5.5  
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704     29   5.5  
04_03_0586 + 17572283-17572512,17572712-17572817                       29   7.3  
12_02_0906 + 24194108-24194253,24194852-24194984                       29   9.6  

>09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784
          Length = 773

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 487 CIALDSVCVDAPSSRGVECKTDVAGQQXSPILLTGEE 377
           C++ +S CVDA + RG  CK    G + +P +  G E
Sbjct: 273 CVSSNSYCVDATNGRGYRCKCS-DGYKGNPYITDGCE 308


>04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834
          Length = 253

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -2

Query: 487 CIALDSVCVDAPSSRGVECKTDVAGQQXSPILLTGEEXXXXXXXXXVYH 341
           CI+ +SVCV++ S  G  C     G Q +P LL G +          YH
Sbjct: 161 CISSNSVCVNSSSGPGYICNC-THGYQGNPYLLHGCQDIDECEEHENYH 208


>09_04_0563 +
           18546967-18547407,18547503-18548007,18548271-18548314,
           18548639-18548734,18548830-18549340,18549506-18549540
          Length = 543

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 417 ATSVLHSTPRLDGASTQTESSAMQRKTQ 500
           AT +L   PR+DGAS+   S+A  R+ Q
Sbjct: 190 ATGILQRFPRVDGASSSASSAADAREVQ 217


>07_01_0689 - 5218920-5220107
          Length = 395

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
 Frame = -2

Query: 478 LDSVCVDAPSSRGVECKT----DVAGQQXSPILLTG 383
           L      AP  RGVEC T    D+A +Q  P+L+ G
Sbjct: 199 LSPATTSAPRDRGVECDTIAGFDLATEQWRPVLMDG 234


>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
          Length = 748

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 487 CIALDSVCVDAPSSRGVECKTDVAGQQXSPILLTG 383
           C++ DS CVD+ +  G  C    AG + +P LL G
Sbjct: 263 CVSRDSECVDSRNGPGYLCNCS-AGFEGNPYLLDG 296


>04_03_0586 + 17572283-17572512,17572712-17572817
          Length = 111

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 216 MRGPGGQTMAKARPPTQVRDW 154
           +R  GG  +A+ RPP+  RDW
Sbjct: 59  LRDQGGDYVARLRPPSATRDW 79


>12_02_0906 + 24194108-24194253,24194852-24194984
          Length = 92

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 166 LRRWSCFRHGLPAGXSHSIQSFSRC 240
           +RRW C  HG   G    I S  RC
Sbjct: 1   MRRWGCGGHGGGCGSQRQISSLRRC 25


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,449,417
Number of Sequences: 37544
Number of extensions: 303741
Number of successful extensions: 746
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3666490380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)