Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_F02
         (1199 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.016
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.4  
SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.4  
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)               29   7.4  
SB_4473| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   9.7  

>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1671

 Score = 37.9 bits (84), Expect = 0.016
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +2

Query: 347 NYKYXGNCYYFFSCEQNRAXLLSCDIGLAFDPTTGRCVDAD 469
           NYK  GNC+ F  C       ++C     FDP   RC D D
Sbjct: 385 NYKDSGNCHGFIMCSNGHTYHMTCPGQTNFDPAKKRCEDYD 425



 Score = 37.1 bits (82), Expect = 0.028
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +2

Query: 347 NYKYXGNCYYFFSCEQNRAXLLSCDIGLAFDPTTGRCVDADRVQCNATQNTNDK 508
           +Y+    C  F SC  +    + C   L F+PTT  C + + VQC  T+    K
Sbjct: 450 DYQDPDACEGFISCSNHITYHMPCPENLRFNPTTKHCDNPENVQCGPTRPPTPK 503



 Score = 37.1 bits (82), Expect = 0.028
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = +2

Query: 350 YKYXGNCYYFFSCEQNRAXLLSCDIGLAFDPTTGRCVDADRVQC 481
           Y    NC  F  C       + C   L +DP  GRC  AD V C
Sbjct: 526 YADANNCNGFVMCSNGYIYYMDCPSNLRYDPAKGRCEWADTVDC 569



 Score = 35.5 bits (78), Expect = 0.085
 Identities = 32/130 (24%), Positives = 40/130 (30%), Gaps = 7/130 (5%)
 Frame = +2

Query: 131 HASPPXCXQSRTCVGGRAFAMVCPPGPRIQSSPSAAVXWADLV-----PSCXAEKFLGFT 295
           +A    C     C  G  + M CP   R   +      WAD V     P+         T
Sbjct: 526 YADANNCNGFVMCSNGYIYYMDCPSNLRYDPAKGRC-EWADTVDCGQRPTISPHPPKPTT 584

Query: 296 CPPAPLDAIGNPLNNVINYKYX--GNCYYFFSCEQNRAXLLSCDIGLAFDPTTGRCVDAD 469
            PP P            N  Y    NC  F +C    A    C   L FD     C   +
Sbjct: 585 MPPQPTPPKSPFCEEKKNGDYADPSNCNGFITCSNGYAYKRDCPFNLKFDTKKLECEWPN 644

Query: 470 RVQCNATQNT 499
           +V C +   T
Sbjct: 645 KVNCKSRPTT 654



 Score = 35.1 bits (77), Expect = 0.11
 Identities = 27/119 (22%), Positives = 39/119 (32%), Gaps = 2/119 (1%)
 Frame = +2

Query: 131 HASPPXCXQSRTCVGGRAFAMVCPPGPRIQSSPSAAVXWADLVPSCXAEKFLGFTCPPAP 310
           +A P  C    TC  G A+   CP   +  +       W + V        + +   P P
Sbjct: 605 YADPSNCNGFITCSNGYAYKRDCPFNLKFDTK-KLECEWPNKVNCKSRPTTVPYVTKPTP 663

Query: 311 LDAIGN--PLNNVINYKYXGNCYYFFSCEQNRAXLLSCDIGLAFDPTTGRCVDADRVQC 481
                     N    Y+   NC  +  C        +C  GL F+  T RC     V+C
Sbjct: 664 PSGNSEFCKKNGNGRYRDPHNCLGYIVCRGGNIYFRNCRRGLRFNGVTKRCDLPRNVKC 722


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 149  CXQSRTCVGGRAFAMVCPPG 208
            C   R CV G AF + CPPG
Sbjct: 2878 CPAGRYCVNGTAFGVPCPPG 2897


>SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1601

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 11/48 (22%), Positives = 22/48 (45%)
 Frame = +2

Query: 365 NCYYFFSCEQNRAXLLSCDIGLAFDPTTGRCVDADRVQCNATQNTNDK 508
           +C  ++ C++ R+    C  GL F+     C +  +V C   Q   ++
Sbjct: 241 DCSAYYQCKKGRSFKKFCPDGLKFNALIKSCDEPSKVNCVTKQRDEEE 288


>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
          Length = 1204

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +2

Query: 188  AMVCPPGPRIQSSPSAAVXWADLVPSCXAEKFLGFTCPPAP 310
            ++V P G    SSP AAV    L PS  A   +  T P  P
Sbjct: 1046 SVVKPEGAAKSSSPQAAVGPFSLAPSTTASNMISKTLPSKP 1086


>SB_4473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 326 NPLNNVINYKYXGNCYYFFSCEQNRAXLLSCDIGLAFD 439
           N  ++V N    GNC YFF C  N+  +L    G++ D
Sbjct: 262 NSFHSVFNLLRCGNCPYFFMC-ANQCTMLFRAAGISSD 298


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,742,039
Number of Sequences: 59808
Number of extensions: 311571
Number of successful extensions: 794
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 16,821,457
effective HSP length: 84
effective length of database: 11,797,585
effective search space used: 3716239275
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)