Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_E17
         (1249 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343     29   7.6  
02_05_0584 - 30135768-30135790,30136104-30136866                       24   9.1  

>03_02_0916 + 12364557-12364906,12365485-12365592,12365731-12366343
          Length = 356

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +2

Query: 647 PLPRSLTRCARSF--GCGERXQLTQRR*YGYPQNQGITQ--ERTCEQKASKRPGTV 802
           P PRS  RC      GCG R Q TQR     P N  IT   E TC   ++  P  +
Sbjct: 150 PYPRSYYRCTHKLDQGCGARRQ-TQRC-EADPSNYDITYYGEHTCRDPSTIIPTAI 203


>02_05_0584 - 30135768-30135790,30136104-30136866
          Length = 261

 Score = 24.2 bits (50), Expect(2) = 9.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 9   APTGPSYYFPALGAQGXPVPLPAP 80
           +P G     P+ G+ G P PLP P
Sbjct: 77  SPAGAGGAPPSAGSGGFPFPLPFP 100



 Score = 23.0 bits (47), Expect(2) = 9.1
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +3

Query: 60  PVPLPAPGS 86
           P+PLPAPGS
Sbjct: 100 PLPLPAPGS 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,333,346
Number of Sequences: 37544
Number of extensions: 355472
Number of successful extensions: 966
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3852724812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)