Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_E17
         (1249 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z29117-15|CAA82385.1|  193|Caenorhabditis elegans Hypothetical p...    29   9.1  
Z29117-14|CAA82386.1|  190|Caenorhabditis elegans Hypothetical p...    29   9.1  
Z22179-16|CAA80172.1|  193|Caenorhabditis elegans Hypothetical p...    29   9.1  
Z22179-15|CAA80173.1|  190|Caenorhabditis elegans Hypothetical p...    29   9.1  

>Z29117-15|CAA82385.1|  193|Caenorhabditis elegans Hypothetical
           protein C48B4.12b protein.
          Length = 193

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 15  TGPSYYFPALGAQGXPVPLPAPGSGTVSIIVPSSLKT 125
           +GPS   P +G  G   P P P   T + + P+S  T
Sbjct: 60  SGPSQNQPPIGNDGEETPKPTPKPTTTTTVKPTSPTT 96


>Z29117-14|CAA82386.1|  190|Caenorhabditis elegans Hypothetical
           protein C48B4.12a protein.
          Length = 190

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 15  TGPSYYFPALGAQGXPVPLPAPGSGTVSIIVPSSLKT 125
           +GPS   P +G  G   P P P   T + + P+S  T
Sbjct: 57  SGPSQNQPPIGNDGEETPKPTPKPTTTTTVKPTSPTT 93


>Z22179-16|CAA80172.1|  193|Caenorhabditis elegans Hypothetical
           protein C48B4.12b protein.
          Length = 193

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 15  TGPSYYFPALGAQGXPVPLPAPGSGTVSIIVPSSLKT 125
           +GPS   P +G  G   P P P   T + + P+S  T
Sbjct: 60  SGPSQNQPPIGNDGEETPKPTPKPTTTTTVKPTSPTT 96


>Z22179-15|CAA80173.1|  190|Caenorhabditis elegans Hypothetical
           protein C48B4.12a protein.
          Length = 190

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 15  TGPSYYFPALGAQGXPVPLPAPGSGTVSIIVPSSLKT 125
           +GPS   P +G  G   P P P   T + + P+S  T
Sbjct: 57  SGPSQNQPPIGNDGEETPKPTPKPTTTTTVKPTSPTT 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,831,913
Number of Sequences: 27780
Number of extensions: 268101
Number of successful extensions: 608
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3464240056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)