Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_E17
         (1249 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   7.3  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   9.7  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   9.7  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   9.7  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -1

Query: 214 ELERSGRKENASRTDSAADSGHFG*PRRTRVFKDEG 107
           E+E+ G + + SR+  + D  +     +T +  D+G
Sbjct: 71  EIEKLGSERSKSRSPDSRDKSNTSNTSKTIILSDKG 106


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -1

Query: 214 ELERSGRKENASRTDSAADSGHFG*PRRTRVFKDEG 107
           E+E+ G + + SR+  + D  +     +T +  D+G
Sbjct: 71  EIEKLGSERSKSRSPDSRDRSNTSNTSKTVILSDKG 106


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -1

Query: 214 ELERSGRKENASRTDSAADSGHFG*PRRTRVFKDEG 107
           E+E+ G + + SR+  + D  +     +T +  D+G
Sbjct: 71  EIEKLGSERSKSRSPDSRDRSNASNTSKTVILSDKG 106


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = -1

Query: 214 ELERSGRKENASRTDSAADSGHFG*PRRTRVFKDEG 107
           E+E+ G + + SR+  + D  +     +T +  D+G
Sbjct: 71  EIEKLGSERSKSRSPDSRDRSNASNTSKTVILSDKG 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,877
Number of Sequences: 438
Number of extensions: 3473
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42622365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)