Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_E15
         (1197 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase Uch1|Schizosa...    98   2e-21
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    92   1e-19
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    29   1.7  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    28   3.0  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    27   3.9  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    27   3.9  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   6.8  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   6.8  

>SPAC27F1.03c |uch1||ubiquitin C-terminal hydrolase
           Uch1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 98.3 bits (234), Expect = 2e-21
 Identities = 67/211 (31%), Positives = 108/211 (51%), Gaps = 6/211 (2%)
 Frame = +3

Query: 156 PLESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKK 335
           PLE+ P+VL  +LQK+GV +  ++ D+  L+ E   ++PRPV +++ +FP S     +K 
Sbjct: 4   PLENTPEVLEPYLQKIGVQDA-SVFDLFSLE-EIPEYIPRPVHALLFVFPSSGTKTIYKG 61

Query: 336 TEENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDG-HMQKFLNEAK 512
           +    IL K    S  + +  Q I NACGTI L+H+V+N     ++++   ++  +  A+
Sbjct: 62  SR---ILPKD---SDKVLWYPQTIPNACGTIGLLHAVSNGELRRKVNENDFIKSLIRTAE 115

Query: 513 GLDATARGKLLEKSEGIINAHKELAQEGQTNTPSAED-PVNHHFISFV----QKDGALYE 677
           G     R KL+E S+ +   H   A        S ED   + HFI FV    + D   YE
Sbjct: 116 GSSIEERAKLIEDSKELEALHAAFAGPPLEVEGSEEDVETDLHFICFVKGKSKDDNHFYE 175

Query: 678 LDGRKAFPVNHGPTSQETLLEDAAKICKEFM 770
           LDGR+  PV H     + L  +   + K ++
Sbjct: 176 LDGRQEGPVQHSEIESDLLNAEVLSVIKNYI 206


>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 92.3 bits (219), Expect = 1e-19
 Identities = 64/224 (28%), Positives = 113/224 (50%), Gaps = 6/224 (2%)
 Frame = +3

Query: 159 LESNPDVLNKFLQKLGVPNKWNIVDVMGLDPETLSWVPRPVLSVMLLFPISDAYENHKKT 338
           +ES+  V    ++ LGV +   + ++  LD ++L   P  +  ++ LF  +   +    T
Sbjct: 6   IESDAGVFTDLIENLGVKDV-EVDELYSLDVDSLRQFP-DIYGIIFLFKWNSKVDKPDGT 63

Query: 339 EENEILSKGQEVSGNIFYMKQNISNACGTIALVHSVANNTDIIELSDGHMQKFLNEAKGL 518
            + + +        NIF+ KQ I+NAC T AL+  + N++D I+L    + +F + +K L
Sbjct: 64  MDYDSMD-------NIFFAKQVINNACATQALLSVLLNHSDEIDLGTT-LSEFKDFSKTL 115

Query: 519 DATARGKLLEKSEGIINAHKELAQEG-----QTNTPSAEDPVNHHFISFVQKDGALYELD 683
               +G+ L  SE I   H   A+       +    + ED V +HFI++   +   YELD
Sbjct: 116 PPELKGEALGNSEHIRCCHNSFARSDPFISEEVRAATDEDEV-YHFIAYTNINNVFYELD 174

Query: 684 GRKAFPVNHGPTSQETLLEDAAKICKEFMAR-DPNEVRFTVIAL 812
           G +A P+NHG  ++E   E A  + +  +A  DP E+RF ++ +
Sbjct: 175 GLQAAPINHGSCTKEEFAEKAVSVIQARIANYDPAEIRFNLMVI 218


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +3

Query: 552 SEGIINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNHGPTSQET 731
           S  ++    ELA +  TNT      V   ++++V  +   + L   K F   H P+S E 
Sbjct: 126 SRALLEQFAELASK--TNTSHMIHQVYDQYLNYVVLESDFFSLQLPKIFHTFHNPSSDEA 183

Query: 732 LL 737
           L+
Sbjct: 184 LI 185


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -2

Query: 242 SHDIYNIPFVWYAELLQKLVQDIGIGFKRD*SFGRHFSHSNCGVDEGD 99
           +H   +  F W  E L + + DIG+    D S+G H   S    D GD
Sbjct: 133 AHSKIDKEFGWLLEDLDQEIDDIGVPGTEDPSYG-HSEDSEVSDDTGD 179


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 658 KMEHCMS*MAVKLFLSIMAQLHRKLCWKMQQKFAKN 765
           +M HC S     L   I   L R L W+ +QK A N
Sbjct: 508 RMSHCSSNSNKVLASEISESLRRDLLWERRQKAAMN 543


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +3

Query: 561  IINAHKELAQEGQTNTPSAEDPVNHHFISFVQKDGALYELDGRKAFPVNH-GPTSQETLL 737
            +I+ + E A+E + +  + E  +  H IS   ++  ++  D     P     PT+ E ++
Sbjct: 1205 VISKYIENAKEIELDAVAREGKMVMHVISEHVENAGVHSGDATLVLPPQDLAPTTIERIV 1264

Query: 738  EDAAKICKEFMARDPNEVRF 797
            + AAKI +      P  ++F
Sbjct: 1265 DAAAKIGEALNITGPYNIQF 1284


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 615  AEDPVNHHFISFVQKDGALYELDGR 689
            AE+ V  HF+    KD  LY++D R
Sbjct: 1099 AEESVKRHFLRLWLKDNGLYDVDIR 1123


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 10/31 (32%), Positives = 22/31 (70%)
 Frame = +3

Query: 564 INAHKELAQEGQTNTPSAEDPVNHHFISFVQ 656
           ++A + L ++ +++T + E+PV+HH  S V+
Sbjct: 337 LSARRALFEKKESSTKNVENPVSHHLKSPVR 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,138,624
Number of Sequences: 5004
Number of extensions: 84495
Number of successful extensions: 248
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 645466968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)