Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_E14
         (1207 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098997-9|AAC68720.1|  325|Caenorhabditis elegans Serpentine re...    31   2.2  
AF098997-10|AAC68712.2|  325|Caenorhabditis elegans Serpentine r...    29   5.0  
AF098997-8|AAC68719.3|  335|Caenorhabditis elegans Serpentine re...    29   6.6  
AF016678-7|AAB66154.3|  340|Caenorhabditis elegans Serpentine re...    29   8.7  

>AF098997-9|AAC68720.1|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein42 protein.
          Length = 325

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 13/56 (23%), Positives = 31/56 (55%)
 Frame = +2

Query: 191 YISFFFIMCSLPLYINDIPHIIVLLFEDSINNFVYFIKNIKCALYYILCHVQLVIR 358
           YI+FF+++      +N    ++V+   ++I+N+ YFI   + +      H+ L+++
Sbjct: 9   YITFFYVIGIFSFVLNIAVILLVIYKSENIDNYKYFILMFQVSCMLADFHLSLLVQ 64


>AF098997-10|AAC68712.2|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein43 protein.
          Length = 325

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 13/56 (23%), Positives = 30/56 (53%)
 Frame = +2

Query: 191 YISFFFIMCSLPLYINDIPHIIVLLFEDSINNFVYFIKNIKCALYYILCHVQLVIR 358
           YI++F+++      +N    ++V+   +SI+NF Y+I   +        H+ L+++
Sbjct: 9   YITYFYVIGVFSFALNLAVILLVIYKSESIDNFKYYILAFQVFCMLADFHISLLVQ 64


>AF098997-8|AAC68719.3|  335|Caenorhabditis elegans Serpentine
           receptor, class i protein54 protein.
          Length = 335

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +2

Query: 200 FFFIMCSLPLYINDIPHIIVLLFE-DSINNFVYFIKNIKCALYYILCHVQLVIR 358
           +F I+ S+ L I DI  I ++LF+ + I+NF YF+ N + +      H+  +I+
Sbjct: 15  YFHIIGSISL-IADIFSIYLILFKSEKIDNFRYFLLNFRISCILTDFHLTFLIQ 67


>AF016678-7|AAB66154.3|  340|Caenorhabditis elegans Serpentine
           receptor, class i protein45 protein.
          Length = 340

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
 Frame = +2

Query: 191 YISFFFIMCSLPLYINDIPHIIVLLFEDSINNFVYFI--KNIKCAL----YYILCHVQLV 352
           YI +   +  + L +N+   ++++   + I+NF YF+    + C +      ILC   + 
Sbjct: 28  YIPYLTSIGLISLVLNNAVLLLIIFKSEKIDNFKYFLLALQVSCMMTDFHLSILCQPMIY 87

Query: 353 IR-FKKN*LITASDIDWCN 406
           +  +  N L  A+   WCN
Sbjct: 88  LPIWTTNCLGVAASAVWCN 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,856,380
Number of Sequences: 27780
Number of extensions: 357377
Number of successful extensions: 703
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3318157644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)