Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_E13
         (1254 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr...    39   0.002
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    33   0.063
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    30   0.77 
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    29   1.0  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    29   1.3  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   5.4  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   5.4  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    27   7.2  
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|...    26   9.5  

>SPBC1D7.01 |||prefoldin subunit 1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 112

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 20/100 (20%), Positives = 52/100 (52%)
 Frame = +3

Query: 189 LQVLMIETKKXIENIDHQLAVLGRMQMHTNLTQREIDVLPPGTKTYESMARMFVQSDLEH 368
           +Q   +++++ +  I  Q+A   R    + L ++E++ +      Y S+ +MF++SDL  
Sbjct: 8   IQEKAVDSQQQLRTIMVQIAAKERALKISELAKKELEDVGEDKAVYTSLGKMFMKSDLAS 67

Query: 369 IKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDL 488
           ++ +L  +  +L   I+ L  ++     T + +E +++ +
Sbjct: 68  VRTHLDAEMASLREDIEALQKKQTYHETTASNAEQHLQKI 107


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 33.5 bits (73), Expect = 0.063
 Identities = 20/90 (22%), Positives = 46/90 (51%)
 Frame = +3

Query: 258 RMQMHTNLTQREIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRK 437
           R+Q   +L  +EID+L    K+Y+    +  + + +  K    ++   L+  +D+   + 
Sbjct: 382 RLQRQKSLATQEIDLLRENLKSYDDEEAILSEKNTDMKK---LERIEGLVKLVDEYKLKL 438

Query: 438 VCLNHTLNESESNIRDLIQQKRMKNENQPA 527
             +  +L+  E++    +Q++R KNE++ A
Sbjct: 439 ESMPVSLDVDETSDEVSLQKRRRKNEHKDA 468


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 19/75 (25%), Positives = 34/75 (45%)
 Frame = +3

Query: 312 GTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLI 491
           GTK YE +AR + Q  LE  +Q+ +     L   + D +    C    + +  S+ +D  
Sbjct: 146 GTKVYEELARKYPQHSLESWRQHYKYMKKRL-PPVSDSDESNYC-QRIIVKPYSSQKDYT 203

Query: 492 QQKRMKNENQPAAES 536
           Q    +  + P ++S
Sbjct: 204 QSTHEQTLSSPISKS 218


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = +3

Query: 270 HTNLTQREIDVLPPGTKTY-----ESMARMFVQSDLEHIKQN 380
           H  LT   + V PP T+TY     E+   MF+  DLE++ QN
Sbjct: 202 HIALTTSGMSVHPPVTETYTYPVTEAFQGMFLGLDLEYVPQN 243


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 34/163 (20%), Positives = 64/163 (39%), Gaps = 5/163 (3%)
 Frame = +3

Query: 54   ASXKATRLFVFKIVIGAQASDFIFLT----TLIKMAKTVDLALKQAFVDLQVLMIETKKX 221
            A+ + + L    + I  +  DF+ L     T  ++ K V   L++    LQ + +E+   
Sbjct: 571  ANARKSALHEIFVKINLKIDDFLGLAEYDWTTTQVRKDVSGYLQEMVTYLQTMYLESLAG 630

Query: 222  IENIDHQLAVLGRMQMHTNLTQREIDVLP-PGTKTYESMARMFVQSDLEHIKQNLRQKTN 398
            +   D     L  +    +L    +D+L  P  +   + A    + D+E+++    Q  +
Sbjct: 631  LPKHDKSYVYLETLD---HLCTAMVDLLSDPSIRKVTTAAAEGFKLDVEYLESFAAQVPD 687

Query: 399  TLISRIDDLNNRKVCLNHTLNESESNIRDLIQQKRMKNENQPA 527
              I   D     + C N  L ++     D  +  R  N  QPA
Sbjct: 688  QSIVNADSFIELRQCANLLLGDNMEEYLDTDKFMRDFNRLQPA 730


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 15/71 (21%), Positives = 38/71 (53%)
 Frame = +3

Query: 90   IVIGAQASDFIFLTTLIKMAKTVDLALKQAFVDLQVLMIETKKXIENIDHQLAVLGRMQM 269
            I + +  SD++ L +++++ +   +  +Q F+D Q L + + K +  I    A + ++ +
Sbjct: 1174 IYLNSSTSDYLSLNSILRVLQGKMVKWEQRFLDYQRLYLPSYKELSKI--AAAQIKKVFL 1231

Query: 270  HTNLTQREIDV 302
               L+Q  +D+
Sbjct: 1232 ERPLSQTPLDL 1242


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 15/62 (24%), Positives = 30/62 (48%)
 Frame = +3

Query: 291 EIDVLPPGTKTYESMARMFVQSDLEHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESE 470
           E  +LP    +YE++  +F + D +H+ ++       LI +  D +     L H +N+  
Sbjct: 364 ESQILPCVLHSYETLTNVFHRDDSKHLYESAVDHGRRLIMKFSD-SELHTFLFHCVNKIV 422

Query: 471 SN 476
           +N
Sbjct: 423 AN 424


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 795 FNPFIILFNNTVH 757
           F PF+I+FNN VH
Sbjct: 499 FTPFLIIFNNLVH 511


>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 401

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +3

Query: 318 KTYESMARMFVQSDL--EHIKQNLRQKTNTLISRIDDLNNRKVCLNHTLNESESNIRDLI 491
           KTYE + + +    L  + +K  L    NTL++ + +   +   L+  L  +  + +DL 
Sbjct: 294 KTYEEVEKAYKDLTLSPQDLKLGLESSVNTLLAGVQEQLKQYPDLDSILKAAYPDPKDLK 353

Query: 492 QQKRMKNENQPAAE 533
           +  + K +++  A+
Sbjct: 354 KAMKQKKQDKKNAK 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,708,481
Number of Sequences: 5004
Number of extensions: 67696
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 679614876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)