Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_E12
         (1324 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ509090-1|CAD48858.1|  625|Homo sapiens Wiskott-Aldrich syndrom...    33   2.3  
AF134304-1|AAD33053.2|  496|Homo sapiens Scar2 protein.                33   2.3  
AK075231-1|BAC11488.1|  169|Homo sapiens protein ( Homo sapiens ...    32   5.4  

>AJ509090-1|CAD48858.1|  625|Homo sapiens Wiskott-Aldrich syndrome
            protein family member 4 protein.
          Length = 625

 Score = 33.1 bits (72), Expect = 2.3
 Identities = 18/65 (27%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
 Frame = -3

Query: 1034 PXXPXXXXXXXXPXFGPPXSXNXXT---PPXQTLXXXXPXTXXXXPPXPXXPXLXGLDSX 864
            P  P        P   PP + +  T   PP        P      PP P  P   G D  
Sbjct: 481  PSFPPHPDFAAPPPLPPPPAADYPTLPPPPLSQPTRGAPPPPPPPPPGPPPPPFTGADGQ 540

Query: 863  PIIPP 849
            P +PP
Sbjct: 541  PAVPP 545


>AF134304-1|AAD33053.2|  496|Homo sapiens Scar2 protein.
          Length = 496

 Score = 33.1 bits (72), Expect = 2.3
 Identities = 18/65 (27%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
 Frame = -3

Query: 1034 PXXPXXXXXXXXPXFGPPXSXNXXT---PPXQTLXXXXPXTXXXXPPXPXXPXLXGLDSX 864
            P  P        P   PP + +  T   PP        P      PP P  P   G D  
Sbjct: 352  PSFPPHPDFAAPPPLPPPPAADYPTLPPPPLSQPTRGAPPPPPPPPPGPPPPPFTGADGQ 411

Query: 863  PIIPP 849
            P +PP
Sbjct: 412  PAVPP 416


>AK075231-1|BAC11488.1|  169|Homo sapiens protein ( Homo sapiens cDNA
            FLJ90750 fis, clone PLACE2000118, weakly similar to
            WISKOTT-ALDRICH SYNDROME PROTEIN HOMOLOG. ).
          Length = 169

 Score = 31.9 bits (69), Expect = 5.4
 Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
 Frame = -3

Query: 1034 PXXPXXXXXXXXPXFGPPXSXNXXT---PPXQTLXXXXPXTXXXXPPXPXXPXLXGLDSX 864
            P  P        P   PP + +  T   PP        P      PP P  P   G D  
Sbjct: 25   PSFPPHPDFAAPPPPPPPPAADYPTLPPPPLSQPTGGAPPPPPPPPPGPPPPPFTGADGQ 84

Query: 863  PIIPP 849
            P IPP
Sbjct: 85   PAIPP 89


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,630,155
Number of Sequences: 237096
Number of extensions: 658118
Number of successful extensions: 869
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 19156088040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)