Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_E11
         (1270 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1042 + 8187536-8187616,8187713-8188315                           32   1.1  
01_01_1008 - 7987936-7988628,7988923-7989102                           31   1.5  
12_02_1052 - 25698263-25698394,25698587-25698679,25698945-256989...    30   4.5  
03_03_0201 - 15400953-15401080,15401787-15401882,15402252-154024...    29   5.9  
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254     29   7.8  

>06_01_1042 + 8187536-8187616,8187713-8188315
          Length = 227

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -3

Query: 260 RTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHRGSLPGGNAWY 120
           RTE   A  +  R A   E+G +  G R+ R RR  RGS   G +W+
Sbjct: 63  RTERERA-PLAARPAGEEEEGRRAGGWRRRRRRRQRRGSRSLGGSWW 108


>01_01_1008 - 7987936-7988628,7988923-7989102
          Length = 290

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 230 RKRHASRREKGGQVSGKRQGRNRRAHRGSLPG 135
           R R   RR  GG+V+G+   R+RR  RG+  G
Sbjct: 239 RVRRRGRRGGGGEVNGEEAARSRRRRRGAWEG 270


>12_02_1052 -
           25698263-25698394,25698587-25698679,25698945-25698995,
           25699074-25699258,25699361-25699407,25699704-25699918
          Length = 240

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -2

Query: 339 SYRIRRSGRAERGVRAHSPAWSXRPTPN*DTYSVSYEKA-PRFPKGERRTGIR*AAGSEQ 163
           S R  R+  + R  R  S  W+ RP+    T S+S  +  PRFP   RR  +    GS  
Sbjct: 52  SRRPMRASASSRRRRTPSSTWTPRPSRYGGTPSISTSRGQPRFP---RRRYVLLPPGSLA 108

Query: 162 ESAP 151
           ES P
Sbjct: 109 ESPP 112


>03_03_0201 -
           15400953-15401080,15401787-15401882,15402252-15402402,
           15404352-15404548,15404660-15404819
          Length = 243

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 230 RKRHASRREKG-GQVSGKRQGRNRRAHRGSLPGGN 129
           R RH  +R +G  + S  RQ R RR H   LPGG+
Sbjct: 149 RPRHLHQRLQGLPEFSRARQHRRRRRHDMELPGGS 183


>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
          Length = 425

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -3

Query: 506 QQSADTKYCSSSVAVVRPPLQELCSTAYIPRSA 408
           Q S   K   SSVA   PP + L ST  +PR++
Sbjct: 176 QNSIAAKLACSSVAAASPPPRNLVSTTPVPRNS 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,952,707
Number of Sequences: 37544
Number of extensions: 591705
Number of successful extensions: 1661
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1659
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3934202376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)