Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_E11
         (1270 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   1.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   3.2  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   9.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   9.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 615  KGSQEDPLIFSTGSDAQ 665
            +G Q+DP+IFST  D++
Sbjct: 1126 EGEQKDPVIFSTSFDSK 1142


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 283 WAVCTNPPFSPTAAP 327
           W V  +PP+SP  AP
Sbjct: 264 WDVLPHPPYSPDLAP 278


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 227 KRHASRREKGGQVSGKRQGRNRRAH 153
           KR  +++ +G + +     +NRRAH
Sbjct: 39  KRPKTKKSQGSRTTHNELEKNRRAH 63


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 144 APSVRSPVPTLPLTG 188
           AP    P+P+LPL G
Sbjct: 468 APCFEEPLPSLPLPG 482


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 270,721
Number of Sequences: 438
Number of extensions: 6060
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43462806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)