Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_E10
         (1308 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.61 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.1  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    29   1.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   3.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   10.0 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.61
 Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
 Frame = -3

Query: 547 PXPPPXXPGX-GRXXXPXAPPPPXXGGG 467
           P PPP  PG  G    P  PPPP    G
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 28.7 bits (61), Expect = 1.9
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -3

Query: 550 PPXPPPXXPGXGRXXXPXAPPPP 482
           PP PPP  PG      P  PPPP
Sbjct: 762 PPPPPP--PGVAGAGPPPPPPPP 782



 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/31 (41%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
 Frame = -3

Query: 550 PPXPPPXX--PGXGRXXXPXAPPPPXXGGGP 464
           PP PPP    P       P  PP P  GG P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPP 762


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -3

Query: 547 PXPPPXXPGXGRXXXPXAPPPP 482
           P PPP  PG      P  PPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/39 (38%), Positives = 15/39 (38%)
 Frame = -3

Query: 496 APPPPXXGGGPXEAAXXXXGXXXGGGXRGXGXRGXXGGA 380
           APPPP   GGP        G   GG        G  GGA
Sbjct: 75  APPPPGAEGGPGAGFGGFPGAGPGGARTFHFNMGGPGGA 113


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 19/52 (36%), Positives = 19/52 (36%)
 Frame = +3

Query: 459 SXGPPPXXGGGGAXGXXXRPXPGXXGGGXGGXXXXXPXXXXXXXGGXRXGXG 614
           S GPPP  GG G  G       G   GG GG     P       GG   G G
Sbjct: 197 SGGPPPGPGGFGGFGGFG--GEGHHHGGHGG-FGGGPGGFEGGPGGFGGGPG 245


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 387  PXXPRXPXPLXPPPXXXPXXXXAASXGPPP 476
            P  P  P  + PPP   P      S  PPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,139,859
Number of Sequences: 5004
Number of extensions: 13017
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 715384080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)