Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_E09
(1300 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 34 0.25
Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical pr... 33 0.44
Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical pr... 33 0.44
X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein. 33 0.44
X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein. 33 0.44
M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen ... 32 0.77
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 32 1.0
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 31 1.3
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 31 1.3
Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical pr... 31 1.8
U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protei... 31 1.8
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 30 3.1
Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical pr... 30 4.1
Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical pr... 30 4.1
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 30 4.1
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 30 4.1
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 30 4.1
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 29 5.4
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 29 5.4
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 29 5.4
AF326941-1|AAG49391.1| 139|Caenorhabditis elegans 5H1 protein. 29 7.2
AF125955-7|AAD14713.1| 139|Caenorhabditis elegans Hypothetical ... 29 7.2
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 9.5
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 29 9.5
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 9.5
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 9.5
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 9.5
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 33.9 bits (74), Expect = 0.25
Identities = 31/120 (25%), Positives = 35/120 (29%)
Frame = -1
Query: 1171 GXPGPRGGXXRXXXXXXXXXXXPEXXXXXXXGXRXGXXPXXXXEXXRPPXPGXPGPXXXP 992
G PGPRG + G P + RP PG PGP P
Sbjct: 148 GRPGPRGPPGEVGPAGPSGDNGRKGPPGPPGGP---GGPGEGGDGGRPGNPGRPGP-AGP 203
Query: 991 PGXRXXXXXPGAXXXXXXXXPXPXAXRXXAXXXXRPXAPRXXGAXEGXGEXGRXGXKAXP 812
G PG P P R A +P +P G G GR G P
Sbjct: 204 RGEPGTEYKPG-----QPGRPGPPGPRGEAGPAGQPGSPGNDGESGKPGNAGRPGPPGAP 258
>Z73972-2|CAA98258.1| 316|Caenorhabditis elegans Hypothetical protein
F15H10.2 protein.
Length = 316
Score = 33.1 bits (72), Expect = 0.44
Identities = 21/65 (32%), Positives = 22/65 (33%)
Frame = -1
Query: 1021 PGXPGPXXXPPGXRXXXXXPGAXXXXXXXXPXPXAXRXXAXXXXRPXAPRXXGAXEGXGE 842
PG PGP PPG PG P + A P AP GA GE
Sbjct: 239 PGTPGPAG-PPGSPGPAGAPGQPGQAGSSQPGGPGPQGDAGAPGAPGAPGQAGAPGQDGE 297
Query: 841 XGRXG 827
G G
Sbjct: 298 SGSEG 302
>Z73972-1|CAA98257.1| 316|Caenorhabditis elegans Hypothetical protein
F15H10.1 protein.
Length = 316
Score = 33.1 bits (72), Expect = 0.44
Identities = 21/65 (32%), Positives = 22/65 (33%)
Frame = -1
Query: 1021 PGXPGPXXXPPGXRXXXXXPGAXXXXXXXXPXPXAXRXXAXXXXRPXAPRXXGAXEGXGE 842
PG PGP PPG PG P + A P AP GA GE
Sbjct: 239 PGTPGPAG-PPGSPGPAGAPGQPGQAGSSQPGGPGPQGDAGAPGAPGAPGQAGAPGQDGE 297
Query: 841 XGRXG 827
G G
Sbjct: 298 SGSEG 302
>X51623-1|CAA35955.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 33.1 bits (72), Expect = 0.44
Identities = 21/65 (32%), Positives = 22/65 (33%)
Frame = -1
Query: 1021 PGXPGPXXXPPGXRXXXXXPGAXXXXXXXXPXPXAXRXXAXXXXRPXAPRXXGAXEGXGE 842
PG PGP PPG PG P + A P AP GA GE
Sbjct: 239 PGTPGPAG-PPGSPGPAGAPGQPGQAGSSQPGGPGPQGDAGAPGAPGAPGQAGAPGQDGE 297
Query: 841 XGRXG 827
G G
Sbjct: 298 SGSEG 302
>X51622-1|CAA35954.1| 316|Caenorhabditis elegans collagen protein.
Length = 316
Score = 33.1 bits (72), Expect = 0.44
Identities = 21/65 (32%), Positives = 22/65 (33%)
Frame = -1
Query: 1021 PGXPGPXXXPPGXRXXXXXPGAXXXXXXXXPXPXAXRXXAXXXXRPXAPRXXGAXEGXGE 842
PG PGP PPG PG P + A P AP GA GE
Sbjct: 239 PGTPGPAG-PPGSPGPAGAPGQPGQAGSSQPGGPGPQGDAGAPGAPGAPGQAGAPGQDGE 297
Query: 841 XGRXG 827
G G
Sbjct: 298 SGSEG 302
>M80650-1|AAA27985.1| 298|Caenorhabditis elegans alpha-collagen
protein.
Length = 298
Score = 32.3 bits (70), Expect = 0.77
Identities = 20/82 (24%), Positives = 22/82 (26%)
Frame = -1
Query: 1057 PXXXXEXXRPPXPGXPGPXXXPPGXRXXXXXPGAXXXXXXXXPXPXAXRXXAXXXXRPXA 878
P +P PG PG PP P P P P +
Sbjct: 111 PGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPWKPCPQGPPGPPGPPGPPGDSGEPGS 170
Query: 877 PRXXGAXEGXGEXGRXGXKAXP 812
P G GE G G K P
Sbjct: 171 PGLPGQDAAPGEPGPKGPKGPP 192
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 31.9 bits (69), Expect = 1.0
Identities = 20/65 (30%), Positives = 22/65 (33%)
Frame = -1
Query: 1021 PGXPGPXXXPPGXRXXXXXPGAXXXXXXXXPXPXAXRXXAXXXXRPXAPRXXGAXEGXGE 842
PG PGP PPG PG P + A +P AP G GE
Sbjct: 274 PGAPGPAG-PPGPPGPSGAPGHPGQAGSSLPGAPGPQGDAGAPGQPGAPGQQGEPGEDGE 332
Query: 841 XGRXG 827
G G
Sbjct: 333 SGSEG 337
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 31.5 bits (68), Expect = 1.3
Identities = 29/116 (25%), Positives = 31/116 (26%), Gaps = 2/116 (1%)
Frame = +2
Query: 818 GLXPXTAXLSPXLXSXXXPRGXXXXPXX-SXXPXGXRPXXXXXPPXXGPXXXXXXPX-PR 991
G P P S P G P S P P P P P P
Sbjct: 234 GAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPS 293
Query: 992 WXXPGAXXXXPXGPXXLXRXPGGAXXPGSPXXXLPXFGXPXXSXXXXGPXXGAPPG 1159
P P P + GG P +P P G P P G PPG
Sbjct: 294 GAPPSGGPPGPFDPSGA-QPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPG 348
Score = 31.5 bits (68), Expect = 1.3
Identities = 29/116 (25%), Positives = 30/116 (25%), Gaps = 2/116 (1%)
Frame = +2
Query: 818 GLXPXTAXLSPXLXSXXXPRGXXXXPXX-SXXPXGXRPXXXXXPPXXGPXXXXXXPX-PR 991
G P P S P G P S P P P P P P
Sbjct: 339 GAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPS 398
Query: 992 WXXPGAXXXXPXGPXXLXRXPGGAXXPGSPXXXLPXFGXPXXSXXXXGPXXGAPPG 1159
P P P GG P +P P G P P G PPG
Sbjct: 399 GAPPSGGPPGPFNPSGAP-PSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPG 453
Score = 31.1 bits (67), Expect = 1.8
Identities = 29/116 (25%), Positives = 29/116 (25%), Gaps = 2/116 (1%)
Frame = +2
Query: 818 GLXPXTAXLSPXLXSXXXPRGXXXXPXX-SXXPXGXRPXXXXXPPXXGPXXXXXXPX-PR 991
G P P S P G P S P P P P P P
Sbjct: 219 GAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPS 278
Query: 992 WXXPGAXXXXPXGPXXLXRXPGGAXXPGSPXXXLPXFGXPXXSXXXXGPXXGAPPG 1159
P P P GG P P P G P P G PPG
Sbjct: 279 GAPPSGGPPGPFDPSGAP-PSGGPPGPFDPSGAQPSGGPPGPFNPSGAPPSGGPPG 333
Score = 31.1 bits (67), Expect = 1.8
Identities = 29/116 (25%), Positives = 30/116 (25%), Gaps = 2/116 (1%)
Frame = +2
Query: 818 GLXPXTAXLSPXLXSXXXPRGXXXXPXX-SXXPXGXRPXXXXXPPXXGPXXXXXXPX-PR 991
G P P S P G P S P P P P P P
Sbjct: 354 GAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPS 413
Query: 992 WXXPGAXXXXPXGPXXLXRXPGGAXXPGSPXXXLPXFGXPXXSXXXXGPXXGAPPG 1159
P P P GG P +P P G P P G PPG
Sbjct: 414 GAPPSGGPPGPFNPSGAP-PSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPG 468
Score = 31.1 bits (67), Expect = 1.8
Identities = 29/116 (25%), Positives = 30/116 (25%), Gaps = 2/116 (1%)
Frame = +2
Query: 818 GLXPXTAXLSPXLXSXXXPRGXXXXPXX-SXXPXGXRPXXXXXPPXXGPXXXXXXPX-PR 991
G P P S P G P S P P P P P P
Sbjct: 369 GAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPS 428
Query: 992 WXXPGAXXXXPXGPXXLXRXPGGAXXPGSPXXXLPXFGXPXXSXXXXGPXXGAPPG 1159
P P P GG P +P P G P P G PPG
Sbjct: 429 GAPPSGGPPGPFNPSGAP-PSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPG 483
Score = 31.1 bits (67), Expect = 1.8
Identities = 29/116 (25%), Positives = 30/116 (25%), Gaps = 2/116 (1%)
Frame = +2
Query: 818 GLXPXTAXLSPXLXSXXXPRGXXXXPXX-SXXPXGXRPXXXXXPPXXGPXXXXXXPX-PR 991
G P P S P G P S P P P P P P
Sbjct: 384 GAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPS 443
Query: 992 WXXPGAXXXXPXGPXXLXRXPGGAXXPGSPXXXLPXFGXPXXSXXXXGPXXGAPPG 1159
P P P GG P +P P G P P G PPG
Sbjct: 444 GAPPSGGPPGPFNPSGAP-PSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPG 498
Score = 31.1 bits (67), Expect = 1.8
Identities = 29/116 (25%), Positives = 29/116 (25%), Gaps = 2/116 (1%)
Frame = +2
Query: 818 GLXPXTAXLSPXLXSXXXPRGXXXXPXX-SXXPXGXRPXXXXXPPXXGPXXXXXXPX-PR 991
G P P S P G P S P P P P P P
Sbjct: 399 GAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNPS 458
Query: 992 WXXPGAXXXXPXGPXXLXRXPGGAXXPGSPXXXLPXFGXPXXSXXXXGPXXGAPPG 1159
P P P GG P P P G P P G PPG
Sbjct: 459 GAPPSGGPPGPFNPSGAP-PSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPG 513
Score = 30.7 bits (66), Expect = 2.3
Identities = 29/116 (25%), Positives = 30/116 (25%), Gaps = 2/116 (1%)
Frame = +2
Query: 818 GLXPXTAXLSPXLXSXXXPRGXXXXPXX-SXXPXGXRPXXXXXPPXXGPXXXXXXPX-PR 991
G P P S P G P S P P P P P P
Sbjct: 174 GAPPSGGPPGPFGPSGAPPSGGPPGPFNPSEAPPSGGPTGPFDPSGAPPSGGPPGPFNPS 233
Query: 992 WXXPGAXXXXPXGPXXLXRXPGGAXXPGSPXXXLPXFGXPXXSXXXXGPXXGAPPG 1159
P P P GG P +P P G P P G PPG
Sbjct: 234 GAPPSGGPPGPFDPSGAP-PSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPG 288
Score = 30.7 bits (66), Expect = 2.3
Identities = 29/116 (25%), Positives = 30/116 (25%), Gaps = 2/116 (1%)
Frame = +2
Query: 818 GLXPXTAXLSPXLXSXXXPRGXXXXPXX-SXXPXGXRPXXXXXPPXXGPXXXXXXPX-PR 991
G P P S P G P S P P P P P P
Sbjct: 264 GAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPSGAQPSGGPPGPFNPS 323
Query: 992 WXXPGAXXXXPXGPXXLXRXPGGAXXPGSPXXXLPXFGXPXXSXXXXGPXXGAPPG 1159
P P P GG P +P P G P P G PPG
Sbjct: 324 GAPPSGGPPGPFDPSGAP-PSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPG 378
Score = 30.7 bits (66), Expect = 2.3
Identities = 29/116 (25%), Positives = 30/116 (25%), Gaps = 2/116 (1%)
Frame = +2
Query: 818 GLXPXTAXLSPXLXSXXXPRGXXXXPXX-SXXPXGXRPXXXXXPPXXGPXXXXXXPX-PR 991
G P P S P G P S P P P P P P
Sbjct: 324 GAPPSGGPPGPFDPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDPS 383
Query: 992 WXXPGAXXXXPXGPXXLXRXPGGAXXPGSPXXXLPXFGXPXXSXXXXGPXXGAPPG 1159
P P P GG P +P P G P P G PPG
Sbjct: 384 GAPPSGGPPGPFDPSGAP-PSGGPPGPFNPSGAPPSGGPPGPFNPSGAPPSGGPPG 438
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 31.5 bits (68), Expect = 1.3
Identities = 21/74 (28%), Positives = 24/74 (32%), Gaps = 1/74 (1%)
Frame = -1
Query: 1030 PPXPGX-PGPXXXPPGXRXXXXXPGAXXXXXXXXPXPXAXRXXAXXXXRPXAPRXXGAXE 854
PP PG PGP PPG P P R A + +P G
Sbjct: 183 PPGPGGKPGPAG-PPGENGNNGEPQPGAPGEPGQPGQPGQRGPAGEPGKDGSPGGQGEKG 241
Query: 853 GXGEXGRXGXKAXP 812
GE G+ G P
Sbjct: 242 ASGEPGQPGRDGQP 255
>Z82083-5|CAB04973.1| 298|Caenorhabditis elegans Hypothetical protein
ZK1010.7 protein.
Length = 298
Score = 31.1 bits (67), Expect = 1.8
Identities = 19/70 (27%), Positives = 20/70 (28%)
Frame = -1
Query: 1021 PGXPGPXXXPPGXRXXXXXPGAXXXXXXXXPXPXAXRXXAXXXXRPXAPRXXGAXEGXGE 842
PG PGP PPG PGA P P P G G+
Sbjct: 102 PGLPGPDG-PPGKNGAPGRPGAPGAPGFPGRPPAVCEEITEPPCTPCPPGEPGPPGPPGD 160
Query: 841 XGRXGXKAXP 812
G G P
Sbjct: 161 AGNPGQSGHP 170
>U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protein 73
protein.
Length = 285
Score = 31.1 bits (67), Expect = 1.8
Identities = 23/69 (33%), Positives = 23/69 (33%)
Frame = -1
Query: 1033 RPPXPGXPGPXXXPPGXRXXXXXPGAXXXXXXXXPXPXAXRXXAXXXXRPXAPRXXGAXE 854
RP PG PGP PPG PG P R P P GA
Sbjct: 172 RPGAPGAPGP-QGPPGTAGNDGTPGQPG-------APGQVRTVPAPPGNPGQPGEPGAQG 223
Query: 853 GXGEXGRXG 827
GE GR G
Sbjct: 224 PPGEDGRPG 232
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 30.3 bits (65), Expect = 3.1
Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Frame = +1
Query: 550 PPPPXXXXWRAVRXRSPLXLAXPXFXPGP-XRXPRRPXSP 666
PPPP R RSP P P P R PR P SP
Sbjct: 139 PPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSP 178
>Z78064-2|CAB01508.2| 317|Caenorhabditis elegans Hypothetical protein
F57B1.4 protein.
Length = 317
Score = 29.9 bits (64), Expect = 4.1
Identities = 19/65 (29%), Positives = 21/65 (32%)
Frame = -1
Query: 1021 PGXPGPXXXPPGXRXXXXXPGAXXXXXXXXPXPXAXRXXAXXXXRPXAPRXXGAXEGXGE 842
PG PGP PPG PG P + A P P GA G+
Sbjct: 240 PGTPGPAG-PPGPPGPAGAPGQPGQSGSAQPGGPGPQGDAGAPGAPGQPGQAGAPGQDGD 298
Query: 841 XGRXG 827
G G
Sbjct: 299 SGSEG 303
>Z78064-1|CAB01509.1| 313|Caenorhabditis elegans Hypothetical protein
F57B1.3 protein.
Length = 313
Score = 29.9 bits (64), Expect = 4.1
Identities = 19/65 (29%), Positives = 21/65 (32%)
Frame = -1
Query: 1021 PGXPGPXXXPPGXRXXXXXPGAXXXXXXXXPXPXAXRXXAXXXXRPXAPRXXGAXEGXGE 842
PG PGP PPG PG P + A P P GA G+
Sbjct: 236 PGTPGPAG-PPGPPGPAGAPGQPGQSGSGQPGGPGPQGDAGAPGAPGQPGQAGAPGQDGD 294
Query: 841 XGRXG 827
G G
Sbjct: 295 SGSEG 299
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical protein
F15B9.4 protein.
Length = 1140
Score = 29.9 bits (64), Expect = 4.1
Identities = 21/76 (27%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Frame = +1
Query: 952 LXPXGPXRPPAXPVGXSXGXAXXAXGAXSPLAXSX-GXXXXGXPXPPXXXXRXXXXIXAG 1128
+ P PP P+ G A + GA +P G G P PP AG
Sbjct: 512 IAPMSTNAPPPPPM---PGMAPLSTGAPTPPPPPPVGMANGGPPPPPPLPLDLLKGAVAG 568
Query: 1129 XRXXXRXPPGXPAXPP 1176
+ PP P PP
Sbjct: 569 LKSVPGGPPPPPPPPP 584
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein 34
protein.
Length = 299
Score = 29.9 bits (64), Expect = 4.1
Identities = 19/82 (23%), Positives = 21/82 (25%)
Frame = -1
Query: 1057 PXXXXEXXRPPXPGXPGPXXXPPGXRXXXXXPGAXXXXXXXXPXPXAXRXXAXXXXRPXA 878
P +P PG PG PP P P P P +
Sbjct: 111 PGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGPPGDSGEPGS 170
Query: 877 PRXXGAXEGXGEXGRXGXKAXP 812
P G GE G G P
Sbjct: 171 PGLPGQDAAPGEPGPKGPPGPP 192
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular collagen
RAM-4 protein.
Length = 299
Score = 29.9 bits (64), Expect = 4.1
Identities = 19/82 (23%), Positives = 21/82 (25%)
Frame = -1
Query: 1057 PXXXXEXXRPPXPGXPGPXXXPPGXRXXXXXPGAXXXXXXXXPXPXAXRXXAXXXXRPXA 878
P +P PG PG PP P P P P +
Sbjct: 111 PGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGPPGDSGEPGS 170
Query: 877 PRXXGAXEGXGEXGRXGXKAXP 812
P G GE G G P
Sbjct: 171 PGLPGQDAAPGEPGPKGPPGPP 192
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical protein
Y41E3.2 protein.
Length = 289
Score = 29.5 bits (63), Expect = 5.4
Identities = 20/75 (26%), Positives = 21/75 (28%), Gaps = 2/75 (2%)
Frame = -1
Query: 1030 PPXPGXPGPXXXP--PGXRXXXXXPGAXXXXXXXXPXPXAXRXXAXXXXRPXAPRXXGAX 857
P PG GP P PG PG+ P P A P P G
Sbjct: 170 PGEPGPKGPIGPPGPPGQAGAPGEPGSPAKSEPAVPGPPGPPGQAGQQGPPGPPGSNGID 229
Query: 856 EGXGEXGRXGXKAXP 812
G G G P
Sbjct: 230 GAPGAPGAKGEPGTP 244
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical protein
C53B4.5 protein.
Length = 289
Score = 29.5 bits (63), Expect = 5.4
Identities = 21/74 (28%), Positives = 23/74 (31%), Gaps = 1/74 (1%)
Frame = -1
Query: 1030 PPXPGX-PGPXXXPPGXRXXXXXPGAXXXXXXXXPXPXAXRXXAXXXXRPXAPRXXGAXE 854
PP PG PGP PPG P P R A + A G
Sbjct: 181 PPGPGGKPGPAG-PPGENGRNGEPQPGSPGEPGRPGQPGSRGPAGQPGKDGAQGGPGEKG 239
Query: 853 GXGEXGRXGXKAXP 812
GE G+ G P
Sbjct: 240 ANGEPGQPGRDGQP 253
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 29.5 bits (63), Expect = 5.4
Identities = 23/71 (32%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Frame = -1
Query: 1030 PPXP-GXPGPXXXP--PGXRXXXXXPGAXXXXXXXXPXPXAXRXXAXXXXRPXAPRXXGA 860
P P G PGP P PG R PGA P P + RP AP G
Sbjct: 174 PQGPSGPPGPPGQPGQPGQRGPPGEPGALLPGGDAPPGP------SGPPGRPGAPGQPGK 227
Query: 859 XEGXGEXGRXG 827
G+ G G
Sbjct: 228 AGSPGQDGSNG 238
>AF326941-1|AAG49391.1| 139|Caenorhabditis elegans 5H1 protein.
Length = 139
Score = 29.1 bits (62), Expect = 7.2
Identities = 22/76 (28%), Positives = 23/76 (30%), Gaps = 5/76 (6%)
Frame = -2
Query: 1155 GGAPXXGPXXXXDXXGXPXXGXXXXGXPGXXAPPG-----XRXRXXGPXGXXXXAPGXXH 991
GGA GP G P G G PG PG R G G +
Sbjct: 41 GGAGLGGPGIGGPGLGGPGIGGPGLGGPGVGGGPGAFGPYGRYGGGGYGGYGRYGRYGRY 100
Query: 990 RGXGXXXXXXGPXXGG 943
G G GP GG
Sbjct: 101 GGYGGYGGYGGPGYGG 116
>AF125955-7|AAD14713.1| 139|Caenorhabditis elegans Hypothetical
protein F46E10.2 protein.
Length = 139
Score = 29.1 bits (62), Expect = 7.2
Identities = 22/76 (28%), Positives = 23/76 (30%), Gaps = 5/76 (6%)
Frame = -2
Query: 1155 GGAPXXGPXXXXDXXGXPXXGXXXXGXPGXXAPPG-----XRXRXXGPXGXXXXAPGXXH 991
GGA GP G P G G PG PG R G G +
Sbjct: 41 GGAGLGGPGIGGPGLGGPGIGGPGLGGPGVGGGPGAFGPYGRYGGGGYGGYGRYGRYGRY 100
Query: 990 RGXGXXXXXXGPXXGG 943
G G GP GG
Sbjct: 101 GGYGGYGGYGGPGYGG 116
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical protein
W01B6.7 protein.
Length = 301
Score = 28.7 bits (61), Expect = 9.5
Identities = 21/71 (29%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
Frame = -1
Query: 1030 PPXPGXPGPXXXPPGXRXXXXXP-GAXXXXXXXXPXPXAXRXXAXXXXRPXAPRXXGAXE 854
PP P P PPG P G P P P P GA E
Sbjct: 154 PPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASE 213
Query: 853 --GXGEXGRXG 827
G GE G G
Sbjct: 214 QGGPGEPGPAG 224
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical protein
F02D10.1 protein.
Length = 316
Score = 28.7 bits (61), Expect = 9.5
Identities = 23/92 (25%), Positives = 25/92 (27%), Gaps = 3/92 (3%)
Frame = +2
Query: 893 PXXSXXPXGXRPXXXXXPPXXGPXXXXXXPX---PRWXXPGAXXXXPXGPXXLXRXPGGA 1063
P P +P P GP P P G P GP PG
Sbjct: 153 PCEPSTPPPCQPCPAGPPGPPGPDGTPGEPGGPGPAGSPAGPSGPGPAGPPGPAGPPGND 212
Query: 1064 XXPGSPXXXLPXFGXPXXSXXXXGPXXGAPPG 1159
PG P P + GP PPG
Sbjct: 213 GQPGQPGG--PGQDGASSAGGEAGPGPAGPPG 242
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 28.7 bits (61), Expect = 9.5
Identities = 21/71 (29%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
Frame = -1
Query: 1030 PPXPGXPGPXXXPPGXRXXXXXP-GAXXXXXXXXPXPXAXRXXAXXXXRPXAPRXXGAXE 854
PP P P PPG P G P P P P GA E
Sbjct: 154 PPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASE 213
Query: 853 --GXGEXGRXG 827
G GE G G
Sbjct: 214 QGGPGEPGPAG 224
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.elegans
(nematode)collagen 2 (col-2) gene, complete cds. ).
Length = 301
Score = 28.7 bits (61), Expect = 9.5
Identities = 21/71 (29%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
Frame = -1
Query: 1030 PPXPGXPGPXXXPPGXRXXXXXP-GAXXXXXXXXPXPXAXRXXAXXXXRPXAPRXXGAXE 854
PP P P PPG P G P P P P GA E
Sbjct: 154 PPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASE 213
Query: 853 --GXGEXGRXG 827
G GE G G
Sbjct: 214 QGGPGEPGPAG 224
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 28.7 bits (61), Expect = 9.5
Identities = 21/71 (29%), Positives = 21/71 (29%), Gaps = 3/71 (4%)
Frame = -1
Query: 1030 PPXPGXPGPXXXPPGXRXXXXXP-GAXXXXXXXXPXPXAXRXXAXXXXRPXAPRXXGAXE 854
PP P P PPG P G P P P P GA E
Sbjct: 154 PPGPAGPAGPPGPPGPDGNPGSPAGPSGPGPAGPPGPAGPAGNDGAPGAPGGPGEPGASE 213
Query: 853 --GXGEXGRXG 827
G GE G G
Sbjct: 214 QGGPGEPGPAG 224
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,120,663
Number of Sequences: 27780
Number of extensions: 240752
Number of successful extensions: 785
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3621523944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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