Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_E08
         (1226 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                30   0.047
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    26   0.58 
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    22   9.5  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 29.9 bits (64), Expect = 0.047
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +2

Query: 662 LKLEEVIGVGGFGKVYRGYWNDEVVAVKAARQDANEDIEVIKE--SVLQEARLFWVLQHE 835
           +K    +G GGFG VY+  +  E VA K  + +   ++   ++  S L+ + +  VL  E
Sbjct: 67  IKCGTFLGSGGFGIVYKALYKGEQVAAKIIQTEKYSNMLNSEKHASFLKHSNIVKVLMIE 126

Query: 836 NIVSLKGVCLE 868
              SL  + +E
Sbjct: 127 QGASLSLITME 137


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
 Frame = +2

Query: 653 FSELKLEEV-----IGVGGFGKVYRGYWNDEVVAVKAARQDANEDIEVIKES--VLQEAR 811
           F +L+L+++     +GVGGFG+V       +     A +Q     I   ++   ++ E R
Sbjct: 359 FRDLRLQDLRPLATLGVGGFGRVELVQIAGDSSRSFALKQMKKAQIVETRQQQHIMSEKR 418

Query: 812 LFWVLQHENIVSLKGVCLEEPNLCLVMEYARGGPLNRVL 928
           +      + +V L     +   L ++ME   GG L  VL
Sbjct: 419 IMGEADCDFVVKLFKTFKDRKYLYMLMEACLGGELWTVL 457


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/39 (25%), Positives = 15/39 (38%)
 Frame = -2

Query: 394 RRHHPGRAPIAPLFLSQAPRHSCSLHSPQHITLHTAKQF 278
           R+H P R P  P    Q           Q++T+    +F
Sbjct: 4   RKHKPNRKPRTPFTTQQLLSLEKKFREKQYLTIAERAEF 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 262,957
Number of Sequences: 438
Number of extensions: 5516
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 41781924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)