Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_E07
         (1241 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|c...    59   1e-09
SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|c...    56   8e-09
SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy...    47   5e-06
SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyc...    37   0.007
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    34   0.047
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    27   4.1  
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces...    27   7.1  

>SPAC15E1.09 |grx2||glutaredoxin Grx2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 58.8 bits (136), Expect = 1e-09
 Identities = 29/74 (39%), Positives = 38/74 (51%)
 Frame = +3

Query: 249 CPYCKLAKAVFXQVXQPIKVIELNXRXXGNTIQANLAQLTGFXTVPQVFINGNCVGGGSD 428
           CP+CK AK    +   P K  EL+    G+ IQA L + T   TVP +F     +GG SD
Sbjct: 26  CPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQSTVPSIFFRNQFIGGNSD 85

Query: 429 VKALYESGKLEPML 470
           +  L  SG L  M+
Sbjct: 86  LNKLRSSGTLTKMI 99


>SPAC4F10.20 |grx1||glutaredoxin Grx1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 56.4 bits (130), Expect = 8e-09
 Identities = 26/73 (35%), Positives = 42/73 (57%)
 Frame = +3

Query: 249 CPYCKLAKAVFXQVXQPIKVIELNXRXXGNTIQANLAQLTGFXTVPQVFINGNCVGGGSD 428
           CPYC   + V        +V +++    G+ IQ+ L + TG  TVP +FI+   VGG SD
Sbjct: 25  CPYCHATEKVIADKKIKAQVYQIDLMNNGDEIQSYLLKKTGQRTVPNIFIHQKHVGGNSD 84

Query: 429 VKALYESGKLEPM 467
            +AL++ G+L+ +
Sbjct: 85  FQALFKKGELDSL 97


>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 166

 Score = 47.2 bits (107), Expect = 5e-06
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
 Frame = +3

Query: 249 CPYCKLAKAVFXQVXQ---PIKVIELNXRXXGNTIQANLAQLTGFXTVPQVFINGNCVGG 419
           CPY   AK +  +  +   P  V+E+        ++  L+ ++   T+P +F+ G+ +GG
Sbjct: 76  CPYSAAAKKLLTETLRLDPPAVVVEVTDYEHTQELRDWLSSISDISTMPNIFVGGHSIGG 135

Query: 420 GSDVKALYESGKLEPML 470
              V+ALY+  KL+  L
Sbjct: 136 SDSVRALYQEEKLQSTL 152


>SPAPB2B4.02 |grx5||monothiol glutaredoxin Grx5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 146

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 13/43 (30%), Positives = 29/43 (67%)
 Frame = +3

Query: 342 IQANLAQLTGFXTVPQVFINGNCVGGGSDVKALYESGKLEPML 470
           ++  + + + + T+PQ++ING  VGG   + ++++SG+L  +L
Sbjct: 82  LREGIKEFSDWPTIPQLYINGEFVGGSDILASMHKSGELHKIL 124


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 33.9 bits (74), Expect = 0.047
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +3

Query: 336 NTIQANLAQLTGFXTVPQVFINGNCVGGGSDVKALYESGKLEPML 470
           ++++  L   + + T PQ++I G  VGG   V  + E+G+L+ ML
Sbjct: 198 DSVRQGLKVFSDWPTFPQLYIKGEFVGGLDIVSEMIENGELQEML 242


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/59 (27%), Positives = 26/59 (44%)
 Frame = +1

Query: 820  VRAEIIFFSSYIFIKLCYYVLSKIDKFRFWYHVKMTDKKRAREKTYRHFLSGVDPTITY 996
            +R  +  F  +  I   YY+LS+   F  W H K   K+R   +    F+  +  T T+
Sbjct: 945  IRIWMYSFGIFCLIAGVYYILSESSSFDRWMHGK--HKERGTTRKLEDFVMQLQRTSTH 1001


>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 564 NLKRK*HFICTPKYKFKYANNNKTI 490
           N K   HF+C    KF+  NN K++
Sbjct: 57  NSKANNHFLCNSPLKFEIFNNEKSV 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,594,616
Number of Sequences: 5004
Number of extensions: 68140
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 675349698
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)