Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_E03
         (1202 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    40   5e-04
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    34   0.045
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    26   9.1  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   9.1  

>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 40.3 bits (90), Expect = 5e-04
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = +1

Query: 277 NEPCQVMVVVDGKNFLVCTLQKNKCIQVPLDLYFKTGDSIAFLTNGKCNVHLTG 438
           +E  Q ++    + F++CTL+     Q PL+L    GD + F  +G   +HL+G
Sbjct: 66  DEQMQELLEESQREFVLCTLKPGSLYQQPLNLTITPGDEVFFSASGDATIHLSG 119


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 33.9 bits (74), Expect = 0.045
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 313 KNFLVCTLQKNKCIQVPLDLYFKTGDSIAF-LTNGKCNVHLTG 438
           + F +CTL+K    Q P+D+ F  G+ + F    G   V+L+G
Sbjct: 77  EKFTLCTLKKGSVYQQPIDIIFSPGEEVFFERVGGDIPVYLSG 119


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
 Frame = +1

Query: 202  NKRYTQVVEKPFHISQ-----AAMDTSTGDNEPCQVMV 300
            N+RY Q+VE  F   Q     A    S G N PC+ +V
Sbjct: 1233 NRRYRQIVEVLFRCGQLTVVIATRTLSLGINMPCRTVV 1270


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 340 SGECTRESSFHQQQPSLDMAHYHQLMCP*QPVKCGTASPPL 218
           SG+ T+     Q    +    Y+Q   P QPV+ G  +PP+
Sbjct: 380 SGQSTQHFQPVQPIQPVQSTQYYQPSSPVQPVQNGVPAPPM 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,746
Number of Sequences: 5004
Number of extensions: 50927
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 649451332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)