Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_E02
(1195 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|... 188 1e-48
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 84 3e-17
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|... 66 7e-12
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 58 2e-09
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 29 0.96
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 29 1.3
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T... 29 1.7
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 28 2.2
SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 6.8
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 27 6.8
>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 188 bits (458), Expect = 1e-48
Identities = 100/250 (40%), Positives = 154/250 (61%), Gaps = 5/250 (2%)
Frame = +2
Query: 257 NANWQKLLAS--NLLMDHKXEKQAPKEQYTGKFR-RNRKTEQKINKSKDLQPTVRKFETL 427
++NW+KL + +K + +++Y + +N + E K ++KF
Sbjct: 3 SSNWEKLKKKLDSAKSGRVEKKHSNEKKYLKSVKGKNNENENSYIVDKKRMNELKKFAKE 62
Query: 428 NLEPDQA--DGHEDDIALNDRKQAKNKITKFIAMDCEMVGIGYDGNDHMLARVSLVNKFG 601
N P+ D + D + RK + K+IAMDCEMVG+ D + +LARVS+VN G
Sbjct: 63 NDIPESQVLDAYGVDASKLTRKTNLETLGKYIAMDCEMVGVADDMS--VLARVSIVNYHG 120
Query: 602 DCIYDKFVKPREEVKDYRTIVSGIRKEDLINGEDFSIVQKEVADVIRGKILVGHSLKNDL 781
+YD +V+P+E+V D+RT VSG++ + + F VQ EVA ++ ++LVGH++ NDL
Sbjct: 121 HVVYDTYVRPKEKVTDWRTWVSGVKSFHMRDAPSFEKVQAEVAKILDNRVLVGHAVHNDL 180
Query: 782 NVLFLSHPKRNIRDTSKYKPFKKITKGSTPSLKRLAKEILSIDIQHGEHSSVEDARAAMQ 961
VL LSHP+R IRDTS++ ++K+ KG TP LK+LA+ IL DIQ G+HSSV+DA+A M+
Sbjct: 181 KVLLLSHPRRMIRDTSRFSGYRKLAKGRTPGLKKLAEVILGRDIQSGQHSSVQDAQATME 240
Query: 962 LYRTVSKKWE 991
LY+ V K+ +
Sbjct: 241 LYKKVKKEMD 250
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 84.2 bits (199), Expect = 3e-17
Identities = 67/169 (39%), Positives = 89/169 (52%), Gaps = 7/169 (4%)
Frame = +2
Query: 509 KFIAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRKEDL 688
K +A+DCEMV N +ARV++V+ + IYD+FVKP V DY T SGI +E L
Sbjct: 267 KILAIDCEMVRTE---NGLEIARVTIVDMKSEVIYDEFVKPESPVTDYVTQYSGITEEKL 323
Query: 689 INGED-FSIVQKEVADVI-RGKILVGHSLKNDLNVLFLSHPKRNIRDTSKYKPFKKITKG 862
N S VQ + + +L+GHSL +DLN L +HP +I DT+ T+G
Sbjct: 324 RNVTTVLSDVQSYLKKTVDNNTVLLGHSLNSDLNCLKFTHP--HIIDTAN---IYNHTRG 378
Query: 863 --STPSLKRLAKEILSIDIQHG---EHSSVEDARAAMQLYRTVSKKWEA 994
S PSLK LA + L +IQ H S EDA A + L + K A
Sbjct: 379 PPSKPSLKWLATKWLRREIQKAGALGHDSAEDALACVDLLKLKVKNGPA 427
>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 540
Score = 66.5 bits (155), Expect = 7e-12
Identities = 57/162 (35%), Positives = 82/162 (50%), Gaps = 6/162 (3%)
Frame = +2
Query: 518 AMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRK----ED 685
A+DCE+ Y N LAR+++V K I D F+KP+ ++ T SGI E
Sbjct: 384 ALDCELC---YTTNGMELARLTVVAK-ESIIMDVFIKPKGKILSLNTRFSGIHDAKELES 439
Query: 686 LINGEDFSIVQKEVADVIRGKILVGHSLKNDLNVLFLSHPKRNIRDTSKYKPFKKITKGS 865
I + I KE+ + + IL+GH L+NDLN + L H + + DT+ +
Sbjct: 440 GITMDQMYIKIKELG-MNKNTILIGHGLENDLNAMRLIH--KRVIDTALLFTHAR-GPPF 495
Query: 866 TPSLKRLAKEILSIDIQHGEHSSVEDARAAMQL--YRTVSKK 985
SLK L K+ L IQ H S EDA +A+QL Y+T S +
Sbjct: 496 RYSLKYLTKKYLGTTIQTSTHDSEEDAVSALQLVFYKTKSNE 537
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1115
Score = 58.4 bits (135), Expect = 2e-09
Identities = 53/158 (33%), Positives = 75/158 (47%), Gaps = 11/158 (6%)
Frame = +2
Query: 569 LARVSLVNKFGDC----IYDKFVKPREEVKDYRTIVSGIRKEDLI-NGEDFSIVQKEVAD 733
LARVS++ G D +V ++V DY T SGI DL + +++V +VA
Sbjct: 919 LARVSVLRGEGPNKGLPFIDDYVATDDKVTDYLTEYSGIHPGDLDPDRSPYNVVPLKVAY 978
Query: 734 ------VIRGKILVGHSLKNDLNVLFLSHPKRNIRDTSKYKPFKKITKGSTPSLKRLAKE 895
V G I VGH L+ D ++ L P + DT F ++ SLK LA
Sbjct: 979 KKLRLLVNAGCIFVGHGLQKDFRIINLLVPPEQVVDTVDL--FFLSSRQRKLSLKFLAWY 1036
Query: 896 ILSIDIQHGEHSSVEDARAAMQLYRTVSKKWEAGLSDE 1009
+L +IQ EH S+EDA A++LY K G +E
Sbjct: 1037 LLDEEIQLTEHDSIEDALTALKLYDCYDKLKSQGKLEE 1074
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 29.5 bits (63), Expect = 0.96
Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 4/134 (2%)
Frame = +2
Query: 344 KFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALNDRKQAKNK-ITKFIA 520
+FR +K E+K ++KDL R +++ P + + + L D + KNK I K
Sbjct: 163 QFRERKKIEKK-QEAKDLSLKNRAALDIDILPPSSSDKDKALLLLDNELGKNKFIRKLDY 221
Query: 521 MDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFV---KPREEVKDYRTIVSGIRKEDLI 691
M A S K D KFV K R E + + T ++ E ++
Sbjct: 222 RRTLMPSSRTFSTFAKFAETSFAKK--DPFARKFVPSEKLRSEQRKFPT--ENLKGEKIL 277
Query: 692 NGEDFSIVQKEVAD 733
S+V EV+D
Sbjct: 278 EDNSVSLVNYEVSD 291
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 29.1 bits (62), Expect = 1.3
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +2
Query: 284 SNLLMDHKXEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHED 463
S+ MDH+ +KQA + + K RK + ++ + VR+ N+E G
Sbjct: 520 SSTEMDHQ-QKQARRRRVRRKHAEKRKQMAEKRRNSGTEQVVRQLSKSNVEVIGKGGERK 578
Query: 464 DIALNDRK 487
+A N K
Sbjct: 579 KVASNSNK 586
>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 477
Score = 28.7 bits (61), Expect = 1.7
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +2
Query: 863 STPSLKRLAKEILSIDIQHGEHSSVEDARAAMQLYRTVSKKWE 991
S +L+ L +E SI + H EH S A AAMQL +++ +K E
Sbjct: 331 SLEALQHLYQED-SISLNHIEHDSDSLAEAAMQLTQSMREKHE 372
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 28.3 bits (60), Expect = 2.2
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +2
Query: 326 KEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLEPDQADGHEDDIALNDRKQAKNKI 505
K++Y K RN +++ K + +PT + + NL + +EDDI DRKQ +
Sbjct: 812 KQEYLTK--RNFESKLKSSAVSSRKPTFNEVKPANLLAEDLSDNEDDI---DRKQGLFSL 866
Query: 506 TK 511
K
Sbjct: 867 AK 868
>SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 133
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 76 NLLCASLHFSNLVCLLSFLRNSRQQFL 156
NLL S FS+L+C+L F ++ FL
Sbjct: 15 NLLNTSFSFSSLLCILCFYKDGPLLFL 41
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 26.6 bits (56), Expect = 6.8
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = +2
Query: 257 NANWQKLLASNLLMDHKXEKQAPKEQYTGKFRRNRKTEQKINKSKDLQPTVRKFETLNLE 436
NAN+ +L L H+ + + FR +Q + KDL+ + + + L L+
Sbjct: 710 NANFHRLEQEIQLKQHELTLLIEQRETDSSFRLLSDYQQYKDDVKDLKQRLPELDRLILQ 769
Query: 437 PDQA 448
DQA
Sbjct: 770 SDQA 773
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,876,504
Number of Sequences: 5004
Number of extensions: 76884
Number of successful extensions: 226
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 643474786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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