Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_E02
(1195 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0490 - 17724878-17725045,17725264-17725342,17725434-177254... 146 2e-35
04_04_1390 - 33184233-33184478,33184601-33184705,33184783-331848... 86 4e-17
12_01_0552 + 4469009-4469080,4470052-4470117,4470808-4470941,447... 78 1e-14
02_05_0476 + 29337124-29337158,29338460-29338669,29338760-293389... 51 2e-06
01_06_0086 + 26293452-26294030,26295309-26295353,26295543-26296175 30 4.1
07_03_1125 - 24162298-24162586,24162730-24162783,24162940-241630... 29 9.5
03_05_0169 + 21474655-21474771,21474879-21474971,21475553-214756... 29 9.5
>08_02_0490 - 17724878-17725045,17725264-17725342,17725434-17725498,
17725569-17725657,17725750-17725858,17725969-17726047,
17727247-17727512
Length = 284
Score = 146 bits (355), Expect = 2e-35
Identities = 67/146 (45%), Positives = 101/146 (69%)
Frame = +2
Query: 587 VNKFGDCIYDKFVKPREEVKDYRTIVSGIRKEDLINGEDFSIVQKEVADVIRGKILVGHS 766
VN +G+ +YD++ +P E + DYRT +SGIR + + +DF +VQK+VA++I+G+ILVGH+
Sbjct: 116 VNSWGNVVYDEYTRPVERIVDYRTHISGIRPKHMNKAKDFWVVQKDVAELIKGRILVGHA 175
Query: 767 LKNDLNVLFLSHPKRNIRDTSKYKPFKKITKGSTPSLKRLAKEILSIDIQHGEHSSVEDA 946
L +DL VL L HPK++IRDTS+Y+ F++ +G SLK L ++L IQ EH +EDA
Sbjct: 176 LHHDLKVLLLGHPKKDIRDTSEYEVFRR--EGKRRSLKDLTAQVLGAKIQQKEHCPIEDA 233
Query: 947 RAAMQLYRTVSKKWEAGLSDEXXTKK 1024
RAAM +Y K WE + ++ +K
Sbjct: 234 RAAMFIYNKHKKVWEKNMKEQFRFRK 259
>04_04_1390 - 33184233-33184478,33184601-33184705,33184783-33184890,
33184967-33185101,33185263-33185363,33185495-33185564,
33185642-33185758,33186001-33186138,33186371-33186439,
33186556-33186645,33186758-33186940,33187020-33187052
Length = 464
Score = 86.2 bits (204), Expect = 4e-17
Identities = 65/181 (35%), Positives = 102/181 (56%), Gaps = 10/181 (5%)
Frame = +2
Query: 494 KNKITKF-----IAMDCEMVGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRT 658
+ KIT F +A+DCEMV + +DG + L RV +VN + D+ V P + V DYRT
Sbjct: 132 EGKITNFMKSTMLAIDCEMV-LCHDGTE-ALVRVCVVNSNLEVKLDELVNPLKAVADYRT 189
Query: 659 IVSGIRKEDLINGEDFSI--VQKEVADVI-RGKILVGHSLKNDLNVLFLSHPKRNIRDTS 829
++G+ K+DL G S+ VQK + ++ +GKIL+GHSL DL+ L + + + DT+
Sbjct: 190 SITGLSKKDL-KGVTCSLVDVQKSLKKLLSKGKILIGHSLSKDLHALKFDYSR--VIDTA 246
Query: 830 KYKPFKKITKGSTPSLKRLAKEILSIDI-QHGE-HSSVEDARAAMQLYRTVSKKWEAGLS 1003
+ + ++ SL L K +L + + GE H+ ++DA AAM L V K + G +
Sbjct: 247 YIFKYANLPTTASASLNSLCKSVLGYAVREEGEPHNCLKDAEAAMNL---VLAKLKHGFN 303
Query: 1004 D 1006
D
Sbjct: 304 D 304
>12_01_0552 +
4469009-4469080,4470052-4470117,4470808-4470941,
4471073-4471179,4471695-4471802,4471879-4471949,
4472126-4472185,4472264-4472319,4472663-4472723,
4472809-4473076,4473174-4473355,4473444-4473736,
4474048-4474138
Length = 522
Score = 78.2 bits (184), Expect = 1e-14
Identities = 58/156 (37%), Positives = 88/156 (56%), Gaps = 6/156 (3%)
Frame = +2
Query: 515 IAMDCEM--VGIGYDGNDHMLARVSLVNKFGDCIYDKFVKPREEVKDYRTIVSGIRKEDL 688
+A+DCEM G++ L RV+LV+ G+ + DK VKP + DY T SGI E L
Sbjct: 180 LALDCEMCVTAAGFE-----LTRVTLVDIKGEVVLDKLVKPANPITDYNTRFSGITAEML 234
Query: 689 IN-GEDFSIVQKEVADVI-RGKILVGHSLKNDLNVLFLSHPKRNIRDTSKYKPFKKITKG 862
+ +Q+E ++ + +LVGHSL+NDL L +SH I DT+ + +
Sbjct: 235 ADVTTTLQEIQEEFVGLVHKETVLVGHSLENDLMALRISHDL--IIDTAVLYKHNRGHRF 292
Query: 863 STPSLKRLAKEILSIDIQH--GEHSSVEDARAAMQL 964
+L+ LAK+ L+ +IQ+ H SVEDA+AA++L
Sbjct: 293 KI-ALRVLAKKFLNREIQNTGSGHDSVEDAKAALEL 327
>02_05_0476 +
29337124-29337158,29338460-29338669,29338760-29338936,
29338937-29339165
Length = 216
Score = 50.8 bits (116), Expect = 2e-06
Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 15/105 (14%)
Frame = +2
Query: 632 REEVKDYRTIVSGIRKEDLINGEDFSIVQKEVADVI---------------RGKILVGHS 766
RE + R ++GIR E L + +VQ+ + D++ R +ILVGH
Sbjct: 5 RESSETLRYEMTGIRPEYLRDAMPLKLVQRRIQDILCNGEPLWKIRPRSSGRARILVGHG 64
Query: 767 LKNDLNVLFLSHPKRNIRDTSKYKPFKKITKGSTPSLKRLAKEIL 901
L+++L L L +P IRDT+KY P K +K S SLK L + L
Sbjct: 65 LEHELERLGLEYPAFMIRDTAKYPPLMKTSKLSN-SLKYLTQAYL 108
>01_06_0086 + 26293452-26294030,26295309-26295353,26295543-26296175
Length = 418
Score = 29.9 bits (64), Expect = 4.1
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 7/57 (12%)
Frame = +2
Query: 521 MDCEMVGIGYDGNDH-----MLAR-VSLVNKFGDCIYDKFVKP-REEVKDYRTIVSG 670
++C + G+ DH ++ R V+LVNKF DC+ D++ P R +V +++V G
Sbjct: 340 LECHLHGVAGWHGDHRGFELVVDRDVALVNKFDDCLADEYPVPVRWKVHHNKSMVKG 396
>07_03_1125 -
24162298-24162586,24162730-24162783,24162940-24163035,
24163149-24163190,24163688-24163756,24164262-24164284
Length = 190
Score = 28.7 bits (61), Expect = 9.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 778 SKCSVFVTSQTKYPGHI*VQTIQKDNKRQYSVVEAFS 888
S+CSV V ++ Y ++ ++ +D KR Y ++ S
Sbjct: 11 SRCSVLVRTERDYRSYLVIRRFSQDLKRSYVIINRSS 47
>03_05_0169 +
21474655-21474771,21474879-21474971,21475553-21475642,
21475728-21475811,21476088-21476252,21476995-21477182,
21477363-21477435,21477766-21477819,21478019-21478276,
21478891-21479097,21479293-21479396,21479809-21479953,
21480108-21480242,21480610-21480783
Length = 628
Score = 28.7 bits (61), Expect = 9.5
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +2
Query: 665 SGIRKEDLINGEDFSIVQKEVADVIRGKILVGHSLKNDLNVLFLSHPKRNIRDTSKYKPF 844
S +R E L N + ++ + + +G I G S N + VLF +P + +D +K+ PF
Sbjct: 118 SPLRLEKLANEVTYRRMKDALVQLSKG-IQTGPSA-NLIPVLFGENPPMSSKDVAKFSPF 175
Query: 845 KK 850
K
Sbjct: 176 NK 177
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,742,509
Number of Sequences: 37544
Number of extensions: 437322
Number of successful extensions: 1048
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3643211076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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