Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_E02
         (1195 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   4.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   7.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -1

Query: 202 ALMRVXDQIETKNEIEETADESYEGMTRDRXDWKNAEKRREDCXNCGMR 56
           +++   D+  T NEI      ++    R+   WKNA +       C MR
Sbjct: 516 SIIESPDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMR 564


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +2

Query: 557 NDHMLARVSLVNKF-GDCIYDKFVKPREEVKDYRTI 661
           N+  + +  L+ +   DC YDK  +P  E+     I
Sbjct: 4   NNSSMTQTELLQELTNDCRYDKMTRPPGEINSINPI 39


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 418 KFPNGWLQVF 389
           K+PN WL VF
Sbjct: 166 KYPNNWLSVF 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 252,336
Number of Sequences: 438
Number of extensions: 5089
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40729338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)