Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_E01
         (1216 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0479 + 14529783-14530613                                         33   0.60 
03_06_0444 - 33979319-33980044                                         30   3.2  
08_02_1623 - 28314402-28315094                                         29   7.4  
07_03_1629 - 28246440-28247339                                         29   7.4  
10_08_0206 + 15809261-15809390,15810655-15810763,15811237-158112...    29   9.8  
03_01_0528 + 3966687-3967643                                           29   9.8  
02_04_0452 + 23044190-23045227                                         29   9.8  

>05_03_0479 + 14529783-14530613
          Length = 276

 Score = 32.7 bits (71), Expect = 0.60
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -3

Query: 185 MACPRRACHLRRRSWGRMCKRHRTPPCLRRTWL 87
           MA  RR   +RRR WGR     R P   +R WL
Sbjct: 87  MAASRRFRGVRRRPWGRFSAEIRDPSLQKRLWL 119


>03_06_0444 - 33979319-33980044
          Length = 241

 Score = 30.3 bits (65), Expect = 3.2
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -3

Query: 200 AGPGSMACPRRACHLRRRSWGRMCKRHRTPPCLRRTWL 87
           AG G      R   +R+R WGR     R P   RR WL
Sbjct: 71  AGAGEARPTARFRGVRQRPWGRFAAEIRDPHLRRRLWL 108


>08_02_1623 - 28314402-28315094
          Length = 230

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 197 GPGSMACPRRACHLRRRSWGRMCKRHRTPPCLRRTWL 87
           GP +  CP R   +R+R+WG+     R P    R WL
Sbjct: 47  GPENQRCPFRG--VRQRTWGKWVAEIREPNRGARLWL 81


>07_03_1629 - 28246440-28247339
          Length = 299

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -3

Query: 176 PRRACHLRRRSWGRMCKRHRTPPCLRRTWL 87
           P R   +RRR WGR     R P    R WL
Sbjct: 36  PGRFLGVRRRPWGRYAAEIRDPTTKERHWL 65


>10_08_0206 +
           15809261-15809390,15810655-15810763,15811237-15811265,
           15811721-15813048
          Length = 531

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 191 GSMACPRRACHLRRRSWGRMCKRH 120
           G   C R   H+R   W R CK+H
Sbjct: 140 GPYHCRREGLHVRSNQWKRDCKKH 163


>03_01_0528 + 3966687-3967643
          Length = 318

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 197 GPGSMACPRRACHLRRRSWGRMCKRHRTPPCLRRTWL 87
           GP + AC  R   +R+R+WG+     R P    R WL
Sbjct: 20  GPQNAACEYRG--VRQRTWGKWVAEIREPNKRTRLWL 54


>02_04_0452 + 23044190-23045227
          Length = 345

 Score = 28.7 bits (61), Expect = 9.8
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -3

Query: 197 GPGSMACPRRACHLRRRSWGRMCKRHRTPPCLRRTWL 87
           G GS++  R    +RRR WGR     R P    R WL
Sbjct: 50  GGGSLSGTRYR-GVRRRPWGRFAAEIRDPASKERRWL 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,917,620
Number of Sequences: 37544
Number of extensions: 263337
Number of successful extensions: 536
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3724688640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)