Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_D23
         (1178 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   1.1  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    24   2.6  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    23   4.5  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
 Frame = -1

Query: 797 VFLAFYC----FNVKLQLCAYYIY 738
           V L FYC    F V   LC YY Y
Sbjct: 81  VHLLFYCPFIIFTVHFLLCTYYFY 104



 Score = 25.0 bits (52), Expect = 1.1
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 784 FIVLMLSYS--YVLIIFMTHNI*VSNIFYSII*LQLINMLQNFY 659
           FI+L+  Y   Y  IIF  H + +  I+Y ++ L  +  +  FY
Sbjct: 107 FIILLCVYYFYYAFIIFTVHLLFLLCIYYFVVPLFFLLCIYYFY 150


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 534 KNEIVVIKYYGKTYSNCTSNTICN 605
           K  IV I +YG+T++   SNT  N
Sbjct: 260 KKLIVGIPFYGRTFTLSNSNTNYN 283


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 23.0 bits (47), Expect = 4.5
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +3

Query: 558 YYGKTYSNCTSNTICNYD*SCLFS 629
           ++G+TY+N +S + C  +  C+ +
Sbjct: 28  FFGRTYNNISSISECKNNGECVIN 51


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,801
Number of Sequences: 336
Number of extensions: 3669
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 34434398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)