Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_D23
(1178 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 31 0.41
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha... 29 1.7
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 28 2.9
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 27 3.8
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 27 3.8
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 27 5.1
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo... 27 5.1
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 27 6.7
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo... 26 8.8
>SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 158
Score = 30.7 bits (66), Expect = 0.41
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +2
Query: 302 PAEWESWLRMRRKEPPSEEEI-AKNVAIAQIKKENAAKIEMKRL 430
P E E+W++ R+K P+E I +K + Q+++EN ++ +L
Sbjct: 102 PEEIEAWIQERKKNWPTESNIRSKQLLNTQLEQENIFFLQFMKL 145
>SPCC364.06 |nap1||nucleosome assembly protein Nap1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 393
Score = 28.7 bits (61), Expect = 1.7
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 329 MRRKEPPSEEEIAKNVAIAQIKKENAAKIEMKRLAEGGSLPAVPE 463
+R + P+EEEI K A + +K+ E K+ G +PE
Sbjct: 122 VRGADEPTEEEIKKGEAADENEKKEPTSSESKKQEGGDDTKGIPE 166
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 27.9 bits (59), Expect = 2.9
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 295 ILEILTFRWIIPT*WLSFTFTWISRYFKISVTYVI 191
+L ++ F WI+ T L+FT TW Y IS + +I
Sbjct: 343 LLGVILFFWIV-TPALNFTNTWYGDYLPISSSGII 376
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 113 QVWRIVFRNFINSLRPKQVTGNNV-GKDYIGNTY 211
++W ++F +FI + Q TGN V D++ T+
Sbjct: 2 RIWILIFFSFIKLVSSLQYTGNGVLALDFVAKTF 35
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/39 (28%), Positives = 24/39 (61%)
Frame = -2
Query: 223 RYFKISVTYVIFTNIVSSNLFWSK*INEISKNNAPYLSR 107
RY + ++ +IV N+ +S+ INE+ +++A L++
Sbjct: 819 RYLSLIKCAIVIQSIVRKNIAYSRYINELRESSATLLAK 857
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 27.1 bits (57), Expect = 5.1
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Frame = +2
Query: 242 KRKPSRWYDPPKGQDFQNPIPAEWESWLRMRRKEPPSEEEIAKNVAIAQIKKENAAK--- 412
K PS+ Y P K DF + ++ E++ E E+ + + +++E A
Sbjct: 458 KNYPSKIYSPNKNLDFSH-TASKAETYKNSNELENVKREQPFSELLPSTLQEETATGTTS 516
Query: 413 ---IEMKRLAEGGSLPAVPERGPQSYPTYDEYSTGDSEGVHS 529
KR E ++ + + P +YST DS V S
Sbjct: 517 TTFANAKRRPEDSNISPTNPKKLHTLPRSPQYSTVDSNSVLS 558
>SPAC22E12.14c |sck2||serine/threonine protein kinase
Sck2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 646
Score = 27.1 bits (57), Expect = 5.1
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 350 SEEEIAKNVAIAQIKKENAAKIEMKRLAE---GGSLPAVPERGPQS 478
S++ ++ N A + + A I+ + E GGSLP+V GP S
Sbjct: 13 SKKSVSTNSAKGSLPRSPLASIQTNQPVEEGEGGSLPSVSNLGPSS 58
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 26.6 bits (56), Expect = 6.7
Identities = 8/23 (34%), Positives = 16/23 (69%)
Frame = -1
Query: 266 HTNVMAFFYLHLD*QVFQNKCYL 198
H N+++ +YLHL ++F+ Y+
Sbjct: 891 HQNLLSCYYLHLSKKLFEESAYI 913
>SPCC553.12c ||SPCC794.13|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 521
Score = 26.2 bits (55), Expect = 8.8
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 301 YWILEILTFRWIIP-T*WLSFTFTWISRYFKISVTYVIFTNIVSSNLFWSK 152
+W+ +L ++ T W TFTWI+ F ++ +I I S L W K
Sbjct: 180 FWMFSLLVGSLVVYFTAWRQITFTWITLMF---ISMIIPIGISFSKL-WKK 226
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,008,459
Number of Sequences: 5004
Number of extensions: 58905
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 633513876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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