Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_D23
         (1178 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0225 - 26555217-26555280,26555647-26555713,26555800-265558...    40   0.004
09_04_0627 - 19061106-19061474,19062067-19062909,19063395-190635...    31   1.3  
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976...    29   5.4  
11_02_0038 - 7631462-7634428,7635975-7636250                           29   7.1  
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208...    29   7.1  

>05_06_0225 -
           26555217-26555280,26555647-26555713,26555800-26555871,
           26557058-26557109,26557250-26557302,26557476-26557535,
           26557718-26558075
          Length = 241

 Score = 39.9 bits (89), Expect = 0.004
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
 Frame = +2

Query: 257 RWYDPPKGQDFQNPIPAEWESWLRMRRKEPPSEEEIAKNVAIAQIKKENAA-KIEMKRLA 433
           RW +       Q  +  EW  WL  +RK+ P+ EE+A+  A  +  K+N   K E   L 
Sbjct: 124 RWVEFKGSDQDQTTVQVEWICWLNGQRKKAPTPEELAELEARRERVKQNIEWKFESPNLK 183

Query: 434 EGGSLPAVPERGPQSYPTYDEYS 502
              S+P  P+        +DE S
Sbjct: 184 --SSIPEFPDTSLDQRKGHDEVS 204


>09_04_0627 -
           19061106-19061474,19062067-19062909,19063395-19063501,
           19064301-19064332,19064384-19064663,19065092-19065475,
           19066730-19066803,19067244-19067310,19067415-19067486,
           19067941-19068000,19068683-19068734,19068874-19068943,
           19069110-19069372
          Length = 890

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 308 EWESWLRMRRKEPPSEEEIAKNVAIAQIKKENAAKIEMKRLAE 436
           EW  WL  +RK+ P+ EE+A+  A  +  K+N   ++ K   E
Sbjct: 95  EWICWLNGQRKKAPTPEELAELEARRERVKQNIELLKKKEEEE 137


>07_03_0873 +
           22194172-22195434,22195534-22195670,22197531-22197639,
           22197739-22197865,22197952-22198012,22199332-22199722
          Length = 695

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 221 PANPSEGKR-KPSRWYDPPKGQDFQNPIPAEWESWLRMRRKEPPSEEE 361
           P+ P+ G+R K +   DPP   D +   PA+     R    +PP E++
Sbjct: 212 PSPPTRGRRRKRAATSDPPPEDDEEEGTPAQPRRRKRAATSDPPPEDD 259


>11_02_0038 - 7631462-7634428,7635975-7636250
          Length = 1080

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +3

Query: 60  EVSSYNFSHFXCLMEXLDKYGALFLEISLIHLDQNRLLETMLVKIT*VTLILKYLLIQVK 239
           E   + F H+ C M  L +Y A  L     + DQ  L  T   K+  ++++ K  ++   
Sbjct: 556 EPDPFYFDHYRCKMHDLLRYLAQHLSREECYFDQLPLEPTTWSKLRRISIVNKTDMLSSV 615

Query: 240 VKESH 254
           V++ H
Sbjct: 616 VEKGH 620


>03_01_0270 -
           2085461-2086205,2086260-2086339,2086598-2086690,
           2086774-2086881,2087012-2087101,2087234-2087275,
           2087516-2087587,2090848-2090985,2091074-2092624
          Length = 972

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 28/100 (28%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
 Frame = +2

Query: 146 NSLRPKQVTGNNVGKDYIGNTYFEIPANPSEG------KRKPSRWYDPPKGQDFQNPIPA 307
           NS +    T   VGK   GN + EI A   +       KR   RW D P G D    I  
Sbjct: 179 NSHKLSTYTSGRVGKSRGGN-HGEITARDGDATIQESQKRPGKRWIDEPVGND---RIKE 234

Query: 308 EWESWLRMRRKEPPSEEEIAKNVAIAQIKKENAAKIEMKR 427
             E     +R     ++E +  V    +KK++A +++  R
Sbjct: 235 RSERRTDGKRNSRGFDDEKSSQVDRPTLKKQDAVRLQDPR 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,183,190
Number of Sequences: 37544
Number of extensions: 360721
Number of successful extensions: 905
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3608253564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)