Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_D23
         (1178 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-36|CAB55150.2|  138|Caenorhabditis elegans Hypothetical...    60   4e-09
AC024876-8|AAF60889.1|  187|Caenorhabditis elegans Hypothetical ...    31   2.1  
Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical pr...    29   6.4  
Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical pr...    29   6.4  
Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical pr...    29   6.4  
Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical pr...    29   6.4  

>AL117204-36|CAB55150.2|  138|Caenorhabditis elegans Hypothetical
           protein Y116A8C.30a protein.
          Length = 138

 Score = 59.7 bits (138), Expect = 4e-09
 Identities = 41/131 (31%), Positives = 58/131 (44%), Gaps = 1/131 (0%)
 Frame = +2

Query: 107 SRQ-VWRIVFRNFINSLRPKQVTGNNVGKDYIGNTYFEIPANPSEGKRKPSRWYDPPKGQ 283
           SRQ  W  V  N    +R      N V +D  GN ++EI    S  ++  SR +DPP   
Sbjct: 2   SRQGAWGRVASNLWKYVRGDFSKKNYVAEDGSGNRFYEI----SNSRQNVSRGFDPPSSG 57

Query: 284 DFQNPIPAEWESWLRMRRKEPPSEEEIAKNVAIAQIKKENAAKIEMKRLAEGGSLPAVPE 463
             Q P   EW++WLR  R+ PPS+ EIA N    Q +    +  E +            +
Sbjct: 58  AQQEP-DLEWQAWLRGTRRFPPSDREIAINRMKQQAQLAQDSNTEKRAPQVQSEGKGAGD 116

Query: 464 RGPQSYPTYDE 496
             PQ +P Y +
Sbjct: 117 HKPQKFPKYKD 127


>AC024876-8|AAF60889.1|  187|Caenorhabditis elegans Hypothetical
           protein Y94H6A.8 protein.
          Length = 187

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 3/110 (2%)
 Frame = +2

Query: 173 GNNVGKDYIGNTYFEIPANPSEGKRKPSRWYDPPKGQ--DFQ-NPIPAEWESWLRMRRKE 343
           G  VG D  GN Y+E   N     R  +RW + P     D+    +P EW SWL     +
Sbjct: 82  GTLVGSDNFGNRYYE--NNAYFVPR--NRWVEFPDKVWLDYDATQVPPEWHSWLHHITDD 137

Query: 344 PPSEEEIAKNVAIAQIKKENAAKIEMKRLAEGGSLPAVPERGPQSYPTYD 493
            PS +       + + K+  +   + K +    +   +    P   P +D
Sbjct: 138 APSVKPPPTQDWVLEHKENTSIYADKKYVPYSTTRTKIQGWQPGEKPQFD 187


>Z75552-8|CAD54158.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 404 AAKIEMKRLAEGGSLPAVPERGPQSYP 484
           AA      LAE GSLPA+P+  P S P
Sbjct: 667 AASSSSLPLAEWGSLPALPQASPSSTP 693


>Z75552-7|CAA99943.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 404 AAKIEMKRLAEGGSLPAVPERGPQSYP 484
           AA      LAE GSLPA+P+  P S P
Sbjct: 672 AASSSSLPLAEWGSLPALPQASPSSTP 698


>Z75539-5|CAD54134.1|  939|Caenorhabditis elegans Hypothetical
           protein F28C1.3b protein.
          Length = 939

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 404 AAKIEMKRLAEGGSLPAVPERGPQSYP 484
           AA      LAE GSLPA+P+  P S P
Sbjct: 667 AASSSSLPLAEWGSLPALPQASPSSTP 693


>Z75539-4|CAA99846.3|  944|Caenorhabditis elegans Hypothetical
           protein F28C1.3a protein.
          Length = 944

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 404 AAKIEMKRLAEGGSLPAVPERGPQSYP 484
           AA      LAE GSLPA+P+  P S P
Sbjct: 672 AASSSSLPLAEWGSLPALPQASPSSTP 698


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,825,762
Number of Sequences: 27780
Number of extensions: 331412
Number of successful extensions: 941
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3224247522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)