Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_D20
         (1221 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.14 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.43 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.7  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.0  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   9.2  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   9.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -2

Query: 410 PPXXPXFPXXPPXPXPLXXXPXXPXPPTPPP 318
           PP  P     PP P P       P PP PPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 417 SXPPPXPXLSXPTPXXXPXXPXPXP 343
           S PPP P +  PTP   P  P P P
Sbjct: 731 SPPPPPPAVIVPTPAPAP-IPVPPP 754



 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
 Frame = -2

Query: 410 PPXXPXFPXXPPXPXPLXXXPXXPX----PPTPPP 318
           PP  P      P P P+   P  P     PP PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.43
 Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
 Frame = -2

Query: 431 PXAXXXXPPXXPXFPXXPPXPXPL-XXXPXXPXPPTPPP 318
           P      PP  P  P  PP P  +    P  P  P PPP
Sbjct: 440 PMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = -2

Query: 410  PPXXPXFPXXPPXPXPLXXXPXXPXPPTPPP 318
            PP        PP P P    P  P P T PP
Sbjct: 1012 PPVPKLSSKAPPVPLPSADAPPIPVPSTAPP 1042



 Score = 28.7 bits (61), Expect = 1.7
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = -2

Query: 431  PXAXXXXPPXXPXFPXXPPXPXPLXXXPXXPXPPTPPP 318
            P      PP  P     PP P P    P  P P T PP
Sbjct: 1182 PKPAAGVPPVPPP-SEAPPVPKPSVGVPPVPPPSTAPP 1218



 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = -2

Query: 431  PXAXXXXPPXXPXFPXXPPXPXPLXXXPXXPXPPTPPP 318
            P      PP        PP P P    P  P P   PP
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -2

Query: 410 PPXXPXFPXXPPXPXPLXXXPXXPXPPTPP 321
           PP  P     PP P P    P  P PP PP
Sbjct: 5   PPGNPP----PPPPPPGFEPPSQPPPPPPP 30



 Score = 27.1 bits (57), Expect = 5.3
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = -2

Query: 380 PPXPXPLXXXPXXPXPPTPPP 318
           PP P P    P    PP PPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -2

Query: 389 PXXPPXPXPLXXXPXXPXPPTPPP 318
           P  PP P P+   P  P  PT  P
Sbjct: 357 PPPPPMPAPIYNVPNVPTVPTVSP 380


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = -1

Query: 417 SXPPPXPXLSXPTPXXXPXXPXPXPXXTSHTXP 319
           S PPP P  + P P   P  P   P       P
Sbjct: 148 SIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAP 180



 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = -2

Query: 431 PXAXXXXPPXXPXFPXXPPXPXPLXXXPXXPXPPTPPP 318
           P      PP  P  P   P   P       P PP  PP
Sbjct: 166 PIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,158,279
Number of Sequences: 5004
Number of extensions: 9917
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 661404424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)