Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_D19
(1226 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0823 + 21765960-21766064,21766166-21766327,21766616-217667... 71 2e-12
07_03_0822 + 21762662-21762767,21763295-21763347,21764639-217647... 64 3e-10
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365... 33 0.46
01_01_1236 - 10020837-10021041,10021746-10021831,10022552-100230... 31 1.9
08_01_0317 - 2807275-2807487,2807573-2807737,2807818-2807987,280... 31 2.4
08_02_1125 + 24488073-24488244,24488358-24488398,24488621-244888... 30 4.3
01_04_0017 - 15113479-15113580,15113950-15114117,15115011-151152... 29 7.5
>07_03_0823 +
21765960-21766064,21766166-21766327,21766616-21766741,
21766831-21766956,21767519-21767698,21768204-21768452
Length = 315
Score = 70.9 bits (166), Expect = 2e-12
Identities = 35/118 (29%), Positives = 65/118 (55%), Gaps = 5/118 (4%)
Frame = +2
Query: 656 LSWLKDQLK--TNNNDYIQSVARCLQMMLRIDEYRFAFLSVDGISTLLSILA---SRVNF 820
+ WL QL+ T+ N + + CL +LR R F+ DG+ L+ +++ ++ +
Sbjct: 29 VDWLCSQLRNPTHPNCSVPTAMHCLATLLREQYVRALFVQADGVKLLIPLISPASTQQSI 88
Query: 821 QVQYQLVFCLWVLTFNPLLAEKMNKFNVIPILADILSDSVKEKVTRIVLAVFRNLIEK 994
Q+ Y+ C+W+L+F + ++ V+P L +++ S KEKV R+V+ RNL+ K
Sbjct: 89 QLLYETCLCIWLLSFYDAAVDYLSTTRVMPRLVEVVKGSTKEKVVRVVIMSIRNLLAK 146
>07_03_0822 +
21762662-21762767,21763295-21763347,21764639-21764764,
21764960-21765062,21765146-21765222
Length = 154
Score = 63.7 bits (148), Expect = 3e-10
Identities = 30/107 (28%), Positives = 63/107 (58%), Gaps = 4/107 (3%)
Frame = +2
Query: 239 QIRASEIRQTQINWQSYLQSQMITQRDHDFIVNLDQRGQKD---LPDKNPDACAEVFLNL 409
++ ++ + I W+SY+ +++I+ + D + + L D++ + VFLN+
Sbjct: 48 ELTTEQVLKRDIPWESYMANKLISGTCLQLLRRYDHKPESQRGPLLDEDGPSYVRVFLNI 107
Query: 410 LTHISKDHTIQYILVLIDDILSEDKSRVKIFRETKFSG-NVWQPFLN 547
L +ISK+ T++Y+L LID++L+ + R +F + SG +++ PFL+
Sbjct: 108 LRNISKEDTVEYVLALIDEMLAVNPKRAALFYDNSLSGEDIYDPFLS 154
>11_01_0471 -
3648871-3649078,3649841-3649926,3650111-3650155,
3650306-3650815,3651700-3653757
Length = 968
Score = 33.1 bits (72), Expect = 0.46
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Frame = +2
Query: 374 NPDACAEVFLNLLTHI--SKDHTIQYILVLIDDILSE-DKSRVKIFRETKFSGNVWQPFL 544
N + +F+ ++ ++ S+DHTIQ +L+L +I+ + D + K+ E + Q
Sbjct: 47 NGETLPHLFITVVRYVLPSEDHTIQKLLLLYLEIVDKRDVASGKVLPEMIL---ICQNLR 103
Query: 545 NLLNRQDEFVQHMTARIIAKLACWHPQLMD 634
N L +E+++ +T R + +L P+L++
Sbjct: 104 NNLQHPNEYIRGVTLRFLCRLN--EPELLE 131
>01_01_1236 -
10020837-10021041,10021746-10021831,10022552-10023061,
10023914-10025965
Length = 950
Score = 31.1 bits (67), Expect = 1.9
Identities = 20/89 (22%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Frame = +2
Query: 374 NPDACAEVFLNLLTHI--SKDHTIQYILVLIDDILSEDKSRVKIFRETKFSGNVWQPFLN 547
N + +F+ ++ ++ S+DHTIQ +L+L +I+ + + + E + Q N
Sbjct: 47 NGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRGLPEMIL---ICQNLRN 103
Query: 548 LLNRQDEFVQHMTARIIAKLACWHPQLMD 634
L+ +E+++ +T R + +L+ P++++
Sbjct: 104 NLHHPNEYIRGVTLRFLCRLS--EPEVLE 130
>08_01_0317 -
2807275-2807487,2807573-2807737,2807818-2807987,
2808256-2808724,2810581-2810727,2810968-2810976,
2811054-2811890
Length = 669
Score = 30.7 bits (66), Expect = 2.4
Identities = 18/48 (37%), Positives = 26/48 (54%)
Frame = +2
Query: 629 MDKSDLHFYLSWLKDQLKTNNNDYIQSVARCLQMMLRIDEYRFAFLSV 772
+D SD+H W+ L++N + + RC +L ID Y FAF SV
Sbjct: 99 LDYSDIH---RWVHHVLRSNARE-VGIFVRCGSKLLSIDGYPFAFNSV 142
>08_02_1125 +
24488073-24488244,24488358-24488398,24488621-24488889,
24489061-24489157,24489407-24489753,24489816-24490173,
24490319-24490894,24491374-24491649
Length = 711
Score = 29.9 bits (64), Expect = 4.3
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 248 ASEIRQTQ-INWQSYLQSQMITQRDHDFIVNLDQRGQKDLPDKNPDACAEVFLNLLTHI 421
A E++ + W + S ++ Q + F++N + Q+D D NP +L++L H+
Sbjct: 460 AIEVQNIEDFTWLNSSYSPVLKQLESQFMINYYFKTQQDKRDNNPKFQNPKYLSILNHL 518
>01_04_0017 -
15113479-15113580,15113950-15114117,15115011-15115229,
15115303-15115446,15115558-15115840,15115936-15115991,
15116067-15116216,15116299-15116385,15116463-15116498,
15116746-15116808,15116887-15116967,15117053-15117142,
15117349-15117426,15117510-15117731,15117788-15117835,
15117948-15118133,15120910-15121009,15121107-15121246
Length = 750
Score = 29.1 bits (62), Expect = 7.5
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Frame = -2
Query: 511 RLTKYLHP-RFIFRKNVINEHKNVLNGVVLADMRQEVEKDFGTGIGILVRQIFLAALV*V 335
R+T+ L P IF+++V NE ++ A ++ EK G L Q+F+ ++ +
Sbjct: 301 RITRGLEPVSQIFKQHVTNEGTALVKQAEDAASNKKPEKKEIVG---LQEQVFVRKIIEL 357
Query: 334 HDKIVIALSD 305
HDK V ++D
Sbjct: 358 HDKYVAYVTD 367
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,062,990
Number of Sequences: 37544
Number of extensions: 559433
Number of successful extensions: 1360
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1358
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3771247248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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