Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_D15
         (1228 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    35   0.027
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    28   3.0  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   4.0  

>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 34.7 bits (76), Expect = 0.027
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = +2

Query: 476 GSYTMITVLSWTKSKRRSLFVSFTIITFLLLCEIYVLNPKMWQQIRG-IQMIAAMKIISV 652
           G+Y ++    +T     SL  S+  +  ++L  I++     W QI G +  I  + ++ V
Sbjct: 221 GNYFVVLAYQYTNMLSASLLDSWATVAVVILSFIFLKVRYHWSQILGVVACIGGLVLLVV 280

Query: 653 AIELDRNIYNNILNPVEYGGYIFCPANC 736
           +  + R  Y+ + NP    GY+   A C
Sbjct: 281 SDVISRGDYSAV-NPGLGDGYMIIGATC 307


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
 Frame = -1

Query: 715 ITSIFNWVEDVIVYISIQFYC---NRNNLHCSNHLNTSDLLPHFWI--QNIY 575
           I  +F +  ++ +YI  QFYC   +RN     N  + S+   +FW+  QN++
Sbjct: 454 IKKVFEYRLNLDLYILKQFYCHYLDRNRKPPLNIKSVSESFKNFWVYLQNVF 505


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
 Frame = +2

Query: 335  SNLLLRFTIQ-FLPLPHNVRHSLSLITGVYLLYNNIGSAIFWTIGLTTGSYTMITVLSWT 511
            +N+ +  ++Q F+ +  N+     ++T  Y  YN      + T  +  G Y +  VLSW 
Sbjct: 1360 NNMFIMLSVQLFMVVLINLGAIYHVVTVCY--YNGNQKLSYDTSIVPRGCYQLGPVLSWL 1417

Query: 512  KSKRRSLFVSFTIITFLLLCEIYVLNPKMWQ 604
            K    S+F+ F  I+F+ L    ++   +W+
Sbjct: 1418 KRCVISIFIVFW-ISFIPLTVHELIERGVWR 1447


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,187,074
Number of Sequences: 5004
Number of extensions: 85184
Number of successful extensions: 262
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 665388788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)