Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_D15
         (1228 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53344-5|AAA96226.2|  442|Caenorhabditis elegans More of ms prot...    38   0.019
AF013489-1|AAC47728.1|  442|Caenorhabditis elegans MOM-1 protein.      38   0.019
AF040647-7|AAB94996.2|  506|Caenorhabditis elegans Amino acid tr...    33   0.41 
AF078788-2|AAC26964.1|  311|Caenorhabditis elegans Hypothetical ...    29   5.1  
Z81542-6|CAE17834.1|  365|Caenorhabditis elegans Hypothetical pr...    29   6.7  

>U53344-5|AAA96226.2|  442|Caenorhabditis elegans More of ms protein
           1 protein.
          Length = 442

 Score = 37.5 bits (83), Expect = 0.019
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +2

Query: 608 IRGIQMIAAMKIISVAIELDRNIYNNI--LNPVEYGGYIFCPANCILGPWMSFQSYNK 775
           IRGI MI  M++ +VA  L++   N    +    Y  YI+ P   I GP++SF+ + K
Sbjct: 129 IRGILMIHIMRLTTVAFNLEKANSNKFRFVQFSSYVEYIYFPPFIIFGPYLSFEQFFK 186


>AF013489-1|AAC47728.1|  442|Caenorhabditis elegans MOM-1 protein.
          Length = 442

 Score = 37.5 bits (83), Expect = 0.019
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +2

Query: 608 IRGIQMIAAMKIISVAIELDRNIYNNI--LNPVEYGGYIFCPANCILGPWMSFQSYNK 775
           IRGI MI  M++ +VA  L++   N    +    Y  YI+ P   I GP++SF+ + K
Sbjct: 129 IRGILMIHIMRLTTVAFNLEKANSNKFRFVQFSSYVEYIYFPPFIIFGPYLSFEQFFK 186


>AF040647-7|AAB94996.2|  506|Caenorhabditis elegans Amino acid
           transporter protein 7 protein.
          Length = 506

 Score = 33.1 bits (72), Expect = 0.41
 Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
 Frame = +2

Query: 467 LTTGSYTMITVLSWTKSKRRSLFVSFTIITFLLLCEIYVLNPKMWQQIRG-IQMIA-AMK 640
           ++ G Y +  + SW        F+++ ++ F +L  + +LN    +++ G  Q++A A+K
Sbjct: 114 ISFGEYIVTGLDSWITIDENWRFMTYRLVGFSMLWPLMLLNFFSLKKVAGAFQIVATAIK 173

Query: 641 IISVAIELDRNIYNNILNPV------EYGGYIFCPANCILGPWMSFQSYN 772
           +I  +I +   +Y+ I           + G  + P N +LG +    +YN
Sbjct: 174 LIVASIIIITGLYHIIFKQQTQNFKNSFTGSDWNPGNLVLGVYSGLFAYN 223


>AF078788-2|AAC26964.1|  311|Caenorhabditis elegans Hypothetical
           protein ZC190.5 protein.
          Length = 311

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 29/132 (21%), Positives = 56/132 (42%)
 Frame = +2

Query: 410 TGVYLLYNNIGSAIFWTIGLTTGSYTMITVLSWTKSKRRSLFVSFTIITFLLLCEIYVLN 589
           T V L+Y +I SA+F  +  + G +    ++  T        +S +    L++ E+Y   
Sbjct: 115 TFVVLIYVSIVSAVFLALSFSVGVHIYGQLILATS------LMSLSDYLGLIMSEVYAWT 168

Query: 590 PKMWQQIRGIQMIAAMKIISVAIELDRNIYNNILNPVEYGGYIFCPANCILGPWMSFQSY 769
             +   + G  +   + +I + I L  N+ +       +       A   L PW+   S 
Sbjct: 169 STLLPAVAGASIFKVLSMIPIWIWLLSNLTDWEYGLANFLYNNILNAYVCLFPWVLI-SR 227

Query: 770 NKSLEVRFLCKR 805
           N+SL+ + L K+
Sbjct: 228 NRSLKKQILAKK 239


>Z81542-6|CAE17834.1|  365|Caenorhabditis elegans Hypothetical
           protein F49A5.9 protein.
          Length = 365

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 601 ATDQRYSDDCCNEDYFCCNR-TG*KYI 678
           +TD  Y+ DC  E +F C R TG  YI
Sbjct: 338 STDHWYTVDCAEESWFLCKRSTGANYI 364


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,974,114
Number of Sequences: 27780
Number of extensions: 473861
Number of successful extensions: 1253
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3391198850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)