Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_D14
(1230 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47726-1|CAA87655.1| 131|Drosophila melanogaster RNA polymerase... 171 2e-42
BT001786-1|AAN71541.1| 131|Drosophila melanogaster RH21608p pro... 171 2e-42
AE014297-233|AAF52039.1| 131|Drosophila melanogaster CG1163-PA ... 171 2e-42
BT030423-1|ABO52843.1| 506|Drosophila melanogaster IP17710p pro... 30 5.6
BT023765-1|AAZ41773.1| 701|Drosophila melanogaster RE18252p pro... 30 5.6
AE014296-390|AAF47594.1| 553|Drosophila melanogaster CG12361-PA... 30 5.6
AE014134-2732|AAN10947.1| 701|Drosophila melanogaster CG5953-PB... 30 5.6
AE014134-2731|AAF53541.2| 701|Drosophila melanogaster CG5953-PA... 30 5.6
>Z47726-1|CAA87655.1| 131|Drosophila melanogaster RNA polymerase
subunit protein.
Length = 131
Score = 171 bits (415), Expect = 2e-42
Identities = 81/96 (84%), Positives = 89/96 (92%), Gaps = 1/96 (1%)
Frame = +3
Query: 234 NVQCLALGQAGGG-VDKSKRITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQ 410
N++ +A G AGGG V KSKRITT+YMTKYERARVLGTRALQIAMCAP+MVEL+GETDPLQ
Sbjct: 35 NIEIIAPGGAGGGGVPKSKRITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQ 94
Query: 411 IAMKELKHGKIPIIIRRYLPDHSYEDWSIDELIIID 518
IAMKELK KIPIIIRRYLPDHSYEDWSIDELI++D
Sbjct: 95 IAMKELKQKKIPIIIRRYLPDHSYEDWSIDELIMVD 130
>BT001786-1|AAN71541.1| 131|Drosophila melanogaster RH21608p
protein.
Length = 131
Score = 171 bits (415), Expect = 2e-42
Identities = 81/96 (84%), Positives = 89/96 (92%), Gaps = 1/96 (1%)
Frame = +3
Query: 234 NVQCLALGQAGGG-VDKSKRITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQ 410
N++ +A G AGGG V KSKRITT+YMTKYERARVLGTRALQIAMCAP+MVEL+GETDPLQ
Sbjct: 35 NIEIIAPGGAGGGGVPKSKRITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQ 94
Query: 411 IAMKELKHGKIPIIIRRYLPDHSYEDWSIDELIIID 518
IAMKELK KIPIIIRRYLPDHSYEDWSIDELI++D
Sbjct: 95 IAMKELKQKKIPIIIRRYLPDHSYEDWSIDELIMVD 130
>AE014297-233|AAF52039.1| 131|Drosophila melanogaster CG1163-PA
protein.
Length = 131
Score = 171 bits (415), Expect = 2e-42
Identities = 81/96 (84%), Positives = 89/96 (92%), Gaps = 1/96 (1%)
Frame = +3
Query: 234 NVQCLALGQAGGG-VDKSKRITTRYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLQ 410
N++ +A G AGGG V KSKRITT+YMTKYERARVLGTRALQIAMCAP+MVEL+GETDPLQ
Sbjct: 35 NIEIIAPGGAGGGGVPKSKRITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQ 94
Query: 411 IAMKELKHGKIPIIIRRYLPDHSYEDWSIDELIIID 518
IAMKELK KIPIIIRRYLPDHSYEDWSIDELI++D
Sbjct: 95 IAMKELKQKKIPIIIRRYLPDHSYEDWSIDELIMVD 130
>BT030423-1|ABO52843.1| 506|Drosophila melanogaster IP17710p protein.
Length = 506
Score = 30.3 bits (65), Expect = 5.6
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +3
Query: 1065 GGGGGGXXXXXXPPPPP 1115
GGGGGG PPPPP
Sbjct: 317 GGGGGGGVVGPAPPPPP 333
Score = 30.3 bits (65), Expect = 5.6
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +1
Query: 1066 GGGGGGXXXXXXPPPPP 1116
GGGGGG PPPPP
Sbjct: 317 GGGGGGGVVGPAPPPPP 333
>BT023765-1|AAZ41773.1| 701|Drosophila melanogaster RE18252p protein.
Length = 701
Score = 30.3 bits (65), Expect = 5.6
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +3
Query: 1065 GGGGGGXXXXXXPPPPP 1115
GGGGGG PPPPP
Sbjct: 512 GGGGGGGVVGPAPPPPP 528
Score = 30.3 bits (65), Expect = 5.6
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +1
Query: 1066 GGGGGGXXXXXXPPPPP 1116
GGGGGG PPPPP
Sbjct: 512 GGGGGGGVVGPAPPPPP 528
>AE014296-390|AAF47594.1| 553|Drosophila melanogaster CG12361-PA
protein.
Length = 553
Score = 30.3 bits (65), Expect = 5.6
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 1116 GGGGGXXXXXXXPPPPPP 1063
GGGGG PPPPPP
Sbjct: 164 GGGGGHGHGHPTPPPPPP 181
Score = 29.9 bits (64), Expect = 7.4
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = +2
Query: 1064 GGGGGGXXXXXXXPPPPP 1117
GGGGGG PPPPP
Sbjct: 163 GGGGGGHGHGHPTPPPPP 180
>AE014134-2732|AAN10947.1| 701|Drosophila melanogaster CG5953-PB,
isoform B protein.
Length = 701
Score = 30.3 bits (65), Expect = 5.6
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +3
Query: 1065 GGGGGGXXXXXXPPPPP 1115
GGGGGG PPPPP
Sbjct: 512 GGGGGGGVVGPAPPPPP 528
Score = 30.3 bits (65), Expect = 5.6
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +1
Query: 1066 GGGGGGXXXXXXPPPPP 1116
GGGGGG PPPPP
Sbjct: 512 GGGGGGGVVGPAPPPPP 528
>AE014134-2731|AAF53541.2| 701|Drosophila melanogaster CG5953-PA,
isoform A protein.
Length = 701
Score = 30.3 bits (65), Expect = 5.6
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +3
Query: 1065 GGGGGGXXXXXXPPPPP 1115
GGGGGG PPPPP
Sbjct: 512 GGGGGGGVVGPAPPPPP 528
Score = 30.3 bits (65), Expect = 5.6
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +1
Query: 1066 GGGGGGXXXXXXPPPPP 1116
GGGGGG PPPPP
Sbjct: 512 GGGGGGGVVGPAPPPPP 528
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,047,007
Number of Sequences: 53049
Number of extensions: 751278
Number of successful extensions: 8617
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5662
length of database: 24,988,368
effective HSP length: 87
effective length of database: 20,373,105
effective search space used: 6560139810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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